Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N04
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             32   0.51 
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               28   8.4  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 28   8.4  

>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 432 CPLPSLKRLSRY-QFTYRNPTQSKRRCLTQYMSQSTDPSPSR 554
           C  P L+  +R+   T R  +QS+R C +   S S  P+P+R
Sbjct: 292 CQKPDLRSATRHTNSTIRRQSQSRRNCYSVISSNSPSPAPNR 333


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 355 PLPG*KRKSPTP*KCTFPNPTPXVKHVPYPV 447
           P+PG  R  P P      +P P V+HVP+PV
Sbjct: 404 PMPGPPRPVPIPFPVPVNHP-PRVEHVPFPV 433


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 356 PYPXRKENPLPRESARSPTLPRLSN 430
           P P R  NP P  +A  P+ PR SN
Sbjct: 846 PTPLRPTNPTPAHAASKPSNPRPSN 870


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 374 ENPLPRESARSPTLPRLSNMSLTQFK 451
           ++P+P ESARS   PR S+ S +Q K
Sbjct: 170 DHPVPTESARSARSPRKSSSSSSQAK 195


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 674 VPAPYPXIQRGTSTXKVHVDRPYPXHIPKPVPYPS 778
           V AP+P +   +    +++  P P  +P+PVP P+
Sbjct: 109 VLAPFPRMPLISPPLPMYIPVPVPQPVPQPVPQPA 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651,311
Number of Sequences: 59808
Number of extensions: 375359
Number of successful extensions: 1137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)