Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N04
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    32   0.60 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    30   2.4  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +2

Query: 650 LPRKGSVHVPAPYPXIQRGTSTXKVHVDRPY------PXHIPKPVPYPSRXPSHT 796
           +P+   V  PAP P     T T KV   +P       P  +P PVP P   P++T
Sbjct: 222 VPKPAPVTAPAPNPPAPENT-TAKVETTKPTKAAPPAPTPVPNPVPSPPPPPANT 275


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 653 PRKGSVHVPAPYPXIQRGTSTXKVHVDRPYPXHI--PKPVPYPSRXP 787
           P+    H P P+P           H  +P+P  +  PKP+P+P   P
Sbjct: 48  PKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMP 94



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 337 PRRKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYP 444
           P+ K  P+P  K K P P    FP P P  K +P+P
Sbjct: 180 PKPKPKPMPKHKPK-PFPKPMLFPKPMPIPKPMPFP 214



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = +1

Query: 337 PRRKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYPV*RDCQGTSSRTATLPSRKEGALP 516
           P+    P+P  K K P P    FP P P  K +P+P          +    P  K   +P
Sbjct: 214 PKPMPKPMPKHKPK-PFPKPMLFPKPMPIPKPMPFP----------KPMPKPKPKPKPMP 262

Query: 517 STCPSRQTRPRQGICARTLPRLKRK 591
              P  + +P+     +  P+LK K
Sbjct: 263 KPKPKLKLKPKPMPFPKPKPKLKPK 287



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +2

Query: 650 LPRKGSVHVPAPYPXIQRGTSTXKVHVDRPYPXHIPKPVPYPSRXP 787
           +P+    H P P+P          +    P+P  +PKP P P   P
Sbjct: 217 MPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMP 262



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 334 LPRRKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYP 444
           +P  K  P+P  K K P P    FP P P  K +P+P
Sbjct: 107 MPFPKPKPMPKHKPK-PFPKPMLFPKPMPIPKPMPFP 142



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 337 PRRKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYP 444
           P+ K  P+P  K K P P    FP P P  K  P+P
Sbjct: 44  PKPKPKPMPKHKPK-PFPKPMLFPKPMPKHKPKPFP 78



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 355 PLPG*KRKS-PTP*KCTFPNPTPXVKHVPYP 444
           P+P  K KS P P    FP P P  KH P P
Sbjct: 92  PMPKSKPKSEPFPNPMPFPKPKPMPKHKPKP 122



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
 Frame = +1

Query: 325 SRSLPRRKAHPLPG*KRKS-----PTP*KCTFPNPTPXVKHVPYPV*RDCQGTSSRTATL 489
           S+  P+ K+ P P    KS     P P    FP P P  K  P P+ +       +    
Sbjct: 6   SKPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLF 65

Query: 490 PSRKEGALPSTCPSRQTRPRQGICARTLPRLKRK 591
           P       P   P     P+     + +P+ K K
Sbjct: 66  PKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPK 99


>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 402 VPQPYPXCQTCPLPSLKRLSRYQFTYRNPTQSKRRCLTQYM-SQSTDPSP 548
           VP+PYP   + P+   K  +++   Y NPT      L QY+ S +T P P
Sbjct: 53  VPRPYPTNNSKPISLQKTKTQFFLNYSNPT-----VLLQYLYSTTTVPRP 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,241
Number of Sequences: 27780
Number of extensions: 264234
Number of successful extensions: 980
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)