Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N04
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   8.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   8.2  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 535 QTRPRQGICARTLPRLKRKF 594
           + RPR    A  L RLKR+F
Sbjct: 20  EKRPRTAFSAEQLARLKREF 39


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 668 VHVPAPYPXIQRGTSTXKVHVDRPYPXHIPKPVP 769
           V++P P P   R     +       P +IP+P P
Sbjct: 104 VYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 137



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 668 VHVPAPYPXIQRGTSTXKVHVDRPYPXHIPKPVP 769
           V++P P P   R     +       P +IP+P P
Sbjct: 130 VYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 163


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 535 QTRPRQGICARTLPRLKRKF 594
           + RPR       L RLKR+F
Sbjct: 20  EKRPRTAFSGEQLARLKREF 39


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 722 VHVDRPYPXHIPKPVPYP 775
           +H +  Y   IP PVP+P
Sbjct: 334 LHYNINYIEQIPVPVPFP 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,260
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)