Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_N04
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    35   0.060
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    32   0.42 
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di...    30   2.2  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    29   3.9  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   9.1  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   9.1  
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    28   9.1  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   9.1  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   9.1  

>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 372  KKIPYPVKVHVPQPYPXCQTCPLPSLKRLSRYQFTYRNPTQ 494
            +++P+     VP+P P  QT PLP  K  +R +F  RN T+
Sbjct: 1373 QRVPFSESPVVPKPSPSTQTEPLPQPKGFNRSRFVNRNCTR 1413


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 295 PQNRNCR*ESSRSLPRRKAHPLPG*KRKSPTP*KC-TFPNPTPXVKHVPYPV*RDCQGTS 471
           P +R     SSRS P+   HP P   +++P P      P P+P   ++P+   R CQ   
Sbjct: 37  PVSRKMTSSSSRSKPKAPTHPPPNPSQEAPVPSPYPPPPPPSPLFTNLPF---RICQSQP 93

Query: 472 SR 477
           +R
Sbjct: 94  AR 95


>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
           Dictyostelium discoideum, U66526
          Length = 900

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 397 CTFPNPTPXVK--HVPYPV*RD-CQGTSSRTAT 486
           C FPNP P +   H+P  V RD CQ T S  +T
Sbjct: 97  CAFPNPPPLLPLLHIPPSVNRDSCQRTGSCPST 129


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 641 KSTLPRKGSVHVPAPYPXIQRGTSTXKVHVDRPYPXHIPKPVPYPSRXPSHT 796
           K+T P+   VH P P P +    S        P P H P P  Y    P H+
Sbjct: 635 KTTSPQSPPVHSPPPPPPVH---SPPPPVFSPPPPMHSPPPPVYSPPPPVHS 683


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 325 SRSLPRRKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYPV*RDCQGTSSRTATLPSRKE 504
           SR   R +  P P  + KSP P K +FP   P     P P  ++    S+     P++K+
Sbjct: 151 SRPPKRSRGPPRPPTRPKSPPPRKSSFP---PSRSPPPPPAKKNASKNSTSAPVSPAKKK 207


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 325 SRSLPRRKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYPV*RDCQGTSSRTATLPSRKE 504
           SR   R +  P P  + KSP P K +FP   P     P P  ++    S+     P++K+
Sbjct: 151 SRPPKRSRGPPRPPTRPKSPPPRKSSFP---PSRSPPPPPAKKNASKNSTSAPVSPAKKK 207


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/70 (27%), Positives = 26/70 (37%)
 Frame = +1

Query: 337 PRRKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYPV*RDCQGTSSRTATLPSRKEGALP 516
           P  K HP P   +  P P     P+P P  K  P+P     +  +    + P       P
Sbjct: 77  PTVKPHPKPPTVKPHPKPPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPKPPTKPPP 136

Query: 517 STCPSRQTRP 546
           ST     T+P
Sbjct: 137 STPKPPTTKP 146


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 653 PRKGSVHVPAPYPXIQRGTSTXKVHVDRPYPXHIPKPVPYPSRXPSH 793
           P+     VP P P +   +    ++   P P H P P  Y S  P H
Sbjct: 526 PKVEDTRVPPPQPPMPSPSPPSPIYSPPP-PVHSPPPPVYSSPPPPH 571


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
 Frame = +1

Query: 337 PRRKAHPLPG*KRKSPT-P*KCTFPNPTPXVKHVPYPV*RDCQGTSSRTATLPSRKEGAL 513
           P+  A P P  K  +P  P  C  P P P  K  P P    C     +    P     A 
Sbjct: 10  PKPVAPPGPSSKPVAPPGPSPCPSPPPKPQPKPPPAPSPSPCPSPPPKPQPKPV-PPPAC 68

Query: 514 PSTCPSRQTRP 546
           P T P  Q +P
Sbjct: 69  PPTPPKPQPKP 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,945
Number of Sequences: 28952
Number of extensions: 252497
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)