Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M23
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.81 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    28   1.4  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   4.3  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   4.3  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   5.7  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   7.6  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 1    YWVINSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 144
            + +  + YL   + CIDFFV V++  N ++A    +   SR +   KA
Sbjct: 1004 FCITPNAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 273 NCLRPPELACLVVHLPPPASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 109
           N L P         +   +S+F S++ T I   N  T + L CSFD +  +  ID
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 97  ENKYIYQSRLWNCIK 141
           ENK++++S  WNC++
Sbjct: 14  ENKFVFRSSSWNCVR 28


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 451  YNLDDMSYSLEEAENMDLRENI 516
            Y++ D SYS+ E  + ++REN+
Sbjct: 1096 YDIHDQSYSVHELHSENMRENV 1117


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +1

Query: 10  INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 189
           I+S   L+N   I  +++     +EI   ENK+I    L N I++ L   C G+I K   
Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452

Query: 190 GDISAPKG 213
             IS  KG
Sbjct: 453 IPISGLKG 460


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = +1

Query: 67  SILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNNGDISAPKGRGRGWQMNNQA 246
           +I A+E   YEN  +  SRL+          CR +   +N G   A  G  R    +N  
Sbjct: 279 TIDAHESSLYEN--VNDSRLYEV------PACRNMA--LNTGYSDADPGYLRTSFRSNSH 328

Query: 247 RELRRPKAVSDEPKVDTSKSKLSADAK--EWYPANYTSQALPAYNTEPAPCRPS 402
             L  P + ++E  V  +   +S  +     Y ++    ++P Y  EP P RPS
Sbjct: 329 NSL--PYSANEEEDVLQADFLVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRPS 380


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = +1

Query: 229 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPCRPSRP 408
           Q +++A  + R  ++    + D S ++  A A+   P N  S +  +  T+ +      P
Sbjct: 225 QPSDEAESITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSISHSSLYTKQSGTAGVLP 284

Query: 409 SVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 501
           +V   +  A   NP    D+S     A+N D
Sbjct: 285 AVNADIDAANRMNP----DISSQFPIADNKD 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,158
Number of Sequences: 5004
Number of extensions: 72116
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)