Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M23
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0286 - 24151135-24151392,24152261-24152330,24153468-24154096     32   0.49 
04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198...    30   2.6  
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811...    29   4.6  
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945           29   4.6  
11_03_0055 - 9356602-9356709,9357042-9357221                           29   6.0  
08_01_0982 - 9947192-9947474,9948649-9948950                           29   6.0  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    29   6.0  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     28   8.0  

>04_04_0286 - 24151135-24151392,24152261-24152330,24153468-24154096
          Length = 318

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 572 PCVVPWWIHLLXHLMMKAIPDPLVD-AIVNQSIG 670
           P   P+W H +   ++ A P+P+VD  ++N S+G
Sbjct: 270 PRCTPYWPHAVLWFLISAFPEPIVDRLLLNMSVG 303


>04_04_0235 +
           23819060-23819114,23819486-23819542,23819707-23819808,
           23820162-23820238,23820347-23820470,23820730-23820794,
           23821827-23821896,23822395-23822470,23822597-23822687,
           23822767-23822889
          Length = 279

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 271 VSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPCRPS 402
           ++DEP +     KL  D KE   AN TS+A       P P  P+
Sbjct: 195 LNDEPWLTLLCKKLQLDIKEIIEANKTSEASFCAENSPVPFHPA 238


>09_02_0374 -
           8112021-8112820,8112908-8113152,8113256-8113455,
           8113584-8114235,8114369-8114661
          Length = 729

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = -2

Query: 540 THNSYQVCYVLP*IHVFSFFK*IRHVIQIVWILILSLTKSTLYRGARWSTWGRFSVVSG* 361
           +H+S+ V  +   +H    F   +H + + WI+  S+TK    R  +  T   +SV S  
Sbjct: 305 SHSSFGVSKLKYPLHTLLVFDSRQHALPVAWIITRSVTKQDTLRWMKALTERIYSVDSTW 364

Query: 360 RLRSVICRVP 331
           R+   +   P
Sbjct: 365 RIGGFVIDDP 374


>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
          Length = 493

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 350 LLKRYPLTTL-NLPHVDHLAPLY 415
           LL+ +PLT L +L H+DH+ PLY
Sbjct: 290 LLRAHPLTPLVSLHHLDHVYPLY 312


>11_03_0055 - 9356602-9356709,9357042-9357221
          Length = 95

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
 Frame = -1

Query: 604 KQMNPPRDHTRCQ-TCP---GQRLS 542
           K+ N PRDH++C+  CP   GQRLS
Sbjct: 55  KKKNEPRDHSQCKPECPWSFGQRLS 79


>08_01_0982 - 9947192-9947474,9948649-9948950
          Length = 194

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 187 NGDISAPKGRGRGWQMNNQARELR 258
           NGD+ AP G G+G    N  RE R
Sbjct: 134 NGDLRAPSGGGQGLGSRNTCREAR 157


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
 Frame = +1

Query: 205 PKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEP 384
           P G  +G  + N        K   D  +VD   +  S D  + Y   +      A+  + 
Sbjct: 211 PPGFRKGLDLGNLKEYKSHWKCYQDGERVDEQSTSSSNDTMDKYSVQFDDLFKIAWEEDS 270

Query: 385 APCRPSRPSVQGRL--RQAQDQNPYNLDDMSYSLEEAENMDLRE 510
               P    VQ  +   +  D +  N+  +  + E  EN+D+ +
Sbjct: 271 DDKVPREDHVQQLVGDEETNDVDKQNISKLQNASETIENLDIEK 314


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 490 QLLQVNKTCHPNCMDFDLELDEVYLVQRG 404
           ++L V  +C P CM+   +LD++ LV RG
Sbjct: 57  RVLMVLMSCCPICMNLYFDLDDIELVFRG 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,484,123
Number of Sequences: 37544
Number of extensions: 488035
Number of successful extensions: 1366
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)