Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M23
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.66 
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    30   2.0  
SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.5  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                29   6.1  
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 532 VMCEITFDPGKFDTLCGPLVDSFASXLNDESYTRPLGGCHC*SVNRRSYFRYNGARLC 705
           ++ ++T  PG+F+ L   LV ++ + +N++     +           S F Y GARLC
Sbjct: 66  ILDQLTESPGEFENLVEDLVLAWKARVNNDETLNEIASVIMEQSILESNFTYTGARLC 123


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 319 DAKEWYPANYTSQALPAYNTEPAPCRPSRPSVQGRLRQAQDQNPYNLD 462
           D K W+P +  +   P   TEP+  +P R    G+   AQ  NP N D
Sbjct: 606 DNKAWHPYHGHTVRAPV-ETEPSYHQPPRGQTNGQATNAQRANPINGD 652


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/51 (19%), Positives = 22/51 (43%)
 Frame = -1

Query: 508 PVDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMGQVQCCKRVAL 356
           P DPC+   +  K C      +D+++  +Y+      + +G    C  + +
Sbjct: 137 PGDPCYTAKETTKQCRQYLSVYDIDVSRIYVNYHNHFIMLGFCYRCLSIII 187


>SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 25/104 (24%), Positives = 44/104 (42%)
 Frame = +1

Query: 187 NGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALP 366
           NG ++  +   RG + NN+    RRP+ +++E +V   +  L    ++      TS    
Sbjct: 282 NGVLNVVRRPRRGEEQNNEEERSRRPRVLTEEQRVRQRQRDLVLTEEQRVLKRQTSYEY- 340

Query: 367 AYNTEPAPCRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 498
                       R S +  +R  Q  + Y LDD   + +EAE +
Sbjct: 341 ------------RLSGEQIVRNKQKDSEYELDDEQRARKEAEKL 372


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +1

Query: 229 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAK---EWYPANYTSQALPAYNTEPAPCRP 399
           Q  N    LR+PK +     V ++KS L           P +  S + P     P P RP
Sbjct: 169 QPTNPIPSLRQPKNIPLSTSVTSAKSSLDHCTSFQINMLPEHACSSSHPLTRPIPKPQRP 228

Query: 400 SRPSVQG 420
            +PS  G
Sbjct: 229 PQPSKSG 235


>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +1

Query: 214 RGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPC 393
           + +  +  +Q ++  RP+  S + K  TSK +   D +   P     QA P  ++  +  
Sbjct: 433 KSKASKSKDQGKQGARPRQASSKTK--TSKPE-DQDKQAARPRQSARQARPRQSSRKSKA 489

Query: 394 RPSRPSVQGRLRQAQDQN 447
           RP + S + +  + QDQ+
Sbjct: 490 RPRQASRKTKTSKPQDQD 507


>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 24/106 (22%), Positives = 44/106 (41%)
 Frame = +1

Query: 181 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 360
           ++ GD    +   RG + NN+    RRP+ +++E +    +  L    K+      TS  
Sbjct: 4   ISRGDKRVKEDPRRGEEHNNEEERSRRPRVLTEEQRARQRQRDLVLTEKQKVRKRQTSSE 63

Query: 361 LPAYNTEPAPCRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 498
                         R S + R+R+ Q  + Y L+D   + +EA  +
Sbjct: 64  Y-------------RLSGEQRVRKKQKDSEYELNDEQRARKEAAKL 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,762,231
Number of Sequences: 59808
Number of extensions: 556487
Number of successful extensions: 1368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)