BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_M23 (835 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66 SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87 SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007) 30 2.0 SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1 SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 29 6.1 SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1 >SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 260 Score = 31.9 bits (69), Expect = 0.66 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +1 Query: 532 VMCEITFDPGKFDTLCGPLVDSFASXLNDESYTRPLGGCHC*SVNRRSYFRYNGARLC 705 ++ ++T PG+F+ L LV ++ + +N++ + S F Y GARLC Sbjct: 66 ILDQLTESPGEFENLVEDLVLAWKARVNNDETLNEIASVIMEQSILESNFTYTGARLC 123 >SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 905 Score = 31.5 bits (68), Expect = 0.87 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +1 Query: 319 DAKEWYPANYTSQALPAYNTEPAPCRPSRPSVQGRLRQAQDQNPYNLD 462 D K W+P + + P TEP+ +P R G+ AQ NP N D Sbjct: 606 DNKAWHPYHGHTVRAPV-ETEPSYHQPPRGQTNGQATNAQRANPINGD 652 >SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007) Length = 434 Score = 30.3 bits (65), Expect = 2.0 Identities = 10/51 (19%), Positives = 22/51 (43%) Frame = -1 Query: 508 PVDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMGQVQCCKRVAL 356 P DPC+ + K C +D+++ +Y+ + +G C + + Sbjct: 137 PGDPCYTAKETTKQCRQYLSVYDIDVSRIYVNYHNHFIMLGFCYRCLSIII 187 >SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 397 Score = 29.5 bits (63), Expect = 3.5 Identities = 25/104 (24%), Positives = 44/104 (42%) Frame = +1 Query: 187 NGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALP 366 NG ++ + RG + NN+ RRP+ +++E +V + L ++ TS Sbjct: 282 NGVLNVVRRPRRGEEQNNEEERSRRPRVLTEEQRVRQRQRDLVLTEEQRVLKRQTSYEY- 340 Query: 367 AYNTEPAPCRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 498 R S + +R Q + Y LDD + +EAE + Sbjct: 341 ------------RLSGEQIVRNKQKDSEYELDDEQRARKEAEKL 372 >SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1008 Score = 28.7 bits (61), Expect = 6.1 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Frame = +1 Query: 229 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAK---EWYPANYTSQALPAYNTEPAPCRP 399 Q N LR+PK + V ++KS L P + S + P P P RP Sbjct: 169 QPTNPIPSLRQPKNIPLSTSVTSAKSSLDHCTSFQINMLPEHACSSSHPLTRPIPKPQRP 228 Query: 400 SRPSVQG 420 +PS G Sbjct: 229 PQPSKSG 235 >SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) Length = 1353 Score = 28.7 bits (61), Expect = 6.1 Identities = 19/78 (24%), Positives = 37/78 (47%) Frame = +1 Query: 214 RGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPC 393 + + + +Q ++ RP+ S + K TSK + D + P QA P ++ + Sbjct: 433 KSKASKSKDQGKQGARPRQASSKTK--TSKPE-DQDKQAARPRQSARQARPRQSSRKSKA 489 Query: 394 RPSRPSVQGRLRQAQDQN 447 RP + S + + + QDQ+ Sbjct: 490 RPRQASRKTKTSKPQDQD 507 >SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1056 Score = 28.3 bits (60), Expect = 8.1 Identities = 24/106 (22%), Positives = 44/106 (41%) Frame = +1 Query: 181 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 360 ++ GD + RG + NN+ RRP+ +++E + + L K+ TS Sbjct: 4 ISRGDKRVKEDPRRGEEHNNEEERSRRPRVLTEEQRARQRQRDLVLTEKQKVRKRQTSSE 63 Query: 361 LPAYNTEPAPCRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 498 R S + R+R+ Q + Y L+D + +EA + Sbjct: 64 Y-------------RLSGEQRVRKKQKDSEYELNDEQRARKEAAKL 96 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,762,231 Number of Sequences: 59808 Number of extensions: 556487 Number of successful extensions: 1368 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1365 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2347493764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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