Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M23
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical...    29   5.4  
AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    28   9.5  

>Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical
           protein T24D5.1 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +2

Query: 263 LRQFQTN-QRWILLNRSYQQMLKNGTLQITLLKRYPLTTLNLPHVDHLAPLYKVDFVKLK 439
           LR F T  +R + L +S  ++L +  + I  L+   L  L   + DH   LY +   K+K
Sbjct: 209 LRAFSTEVKRRVYLEKS--EVLDDQPIAIEFLE-LRLGQLLDGNDDHAVTLYTLMSNKIK 265

Query: 440 IKIHTIWMTCLIHLK 484
           I++ T+ ++ ++HL+
Sbjct: 266 IELDTVLLSLILHLE 280


>AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.33 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +1

Query: 268 AVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPCRPS 402
           A S  P  D S S     A  W  A Y SQA  AY+ EPA   P+
Sbjct: 507 AASTGPSYDQS-SAAGGYAASW-DAYYASQAQSAYSAEPASTYPT 549


>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 277 LKLP*AAGARVP-GCSFATPGLVLLEH*YHRY 185
           L L  A+G   P G SF +PGLV   H  HRY
Sbjct: 55  LLLERASGVASPSGTSFHSPGLVSASHPAHRY 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,021
Number of Sequences: 27780
Number of extensions: 416588
Number of successful extensions: 1046
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)