Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M23
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g281...    34   0.13 
At1g19010.2 68414.m02366 expressed protein                             32   0.54 
At1g19010.1 68414.m02365 expressed protein                             32   0.54 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    30   2.2  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    29   3.8  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    29   5.0  
At4g16144.1 68417.m02448 expressed protein                             28   6.6  
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    28   8.8  

>At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g28170,
           At1g35110, At1g44880, At4g19320, At5g36020, At4g03970,
           At3g43010, At2g10350; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 889

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 274 SDEPKVDTSKSKLSADAKEWYPANYTSQALPA-YNTEPAPCRPSRPSVQGRLRQAQDQNP 450
           S E  +   +  + ADA E  PA ++   LP  +N+E      +   V G+L+ + D+ P
Sbjct: 615 SVEKLLPLHQDHIIADASERVPATHSGLDLPKEHNSEELQTNANETDVYGKLQDSLDREP 674

Query: 451 YNLDDMSYSLEEA 489
            +  D+   +E++
Sbjct: 675 ASHSDIDLPIEQS 687


>At1g19010.2 68414.m02366 expressed protein
          Length = 290

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
 Frame = +1

Query: 223 GWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALP----AYNTEPAP 390
           G Q N    E    +AVS E + D+S  + S  A    P + + + L     +Y     P
Sbjct: 84  GCQTNLSKEEKAPNEAVSLEVREDSSNHERSVVASVIKP-HMSDRDLSINRCSYKENKDP 142

Query: 391 CRPSRPSVQGRLRQAQ--DQNPYNLDDMSY-SLEEAENMDLRENIANLIT 531
           C  + PS+  R R+A+  ++N  N D     SL EA   + +EN   L T
Sbjct: 143 CLYTLPSILSRCREAEVVERNTINGDCADVESLTEARKEEAKENDIELST 192


>At1g19010.1 68414.m02365 expressed protein
          Length = 319

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
 Frame = +1

Query: 223 GWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALP----AYNTEPAP 390
           G Q N    E    +AVS E + D+S  + S  A    P + + + L     +Y     P
Sbjct: 113 GCQTNLSKEEKAPNEAVSLEVREDSSNHERSVVASVIKP-HMSDRDLSINRCSYKENKDP 171

Query: 391 CRPSRPSVQGRLRQAQ--DQNPYNLDDMSY-SLEEAENMDLRENIANLIT 531
           C  + PS+  R R+A+  ++N  N D     SL EA   + +EN   L T
Sbjct: 172 CLYTLPSILSRCREAEVVERNTINGDCADVESLTEARKEEAKENDIELST 221


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
 Frame = +1

Query: 214 RGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPA-- 387
           + R  ++N     L++PK + +EP + T    LS   K    A    Q      ++P   
Sbjct: 34  QSRSRKLNISCSSLKQPKTLEEEP-ITTKTPSLSEQLKP-LSATTLRQEQTQILSKPKSV 91

Query: 388 ---PCRPSRP--SVQGRLRQAQDQNPYNLDDMSYSLEEAENMDLRENIANLITVMCEITF 552
              P RP R   S+Q + R A   NP   D  +++L+   N  +    +  ++++ EI  
Sbjct: 92  WVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALK--LNSSIFTEKSEFLSLLDEIPH 149

Query: 553 DPGKFDTL 576
            P + + L
Sbjct: 150 PPNRDNAL 157


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 172 IVKMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVD 294
           ++  ++G I APK RGR  ++NN A   ++ K +  + +VD
Sbjct: 186 LISSSHGGIPAPKKRGRKTKINNDAAVAKKRK-IERKEEVD 225


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -1

Query: 580 HTRCQTCPGQRLSHT*QLSSLLCSPVDP--CFQLLQVNKTCHPNCMDFDLELDEVYLVQR 407
           H RCQTC G+      +   ++   + P    QL+ +N      C   D +L+EV+    
Sbjct: 462 HIRCQTCNGENHGEYEKAPVVIKHTLHPKHSLQLVLLNGDTTRECYCCDKDLEEVF-YYC 520

Query: 406 GEMVYMGQVQCCKR 365
               Y   + C KR
Sbjct: 521 SACDYAMNIACIKR 534


>At4g16144.1 68417.m02448 expressed protein
          Length = 390

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 229 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPCRPSRP 408
           + N    +L R +  S +   D      S+DA EW PA+  S + P  N +P P   S+P
Sbjct: 95  EFNQLVDKLNRVEDESRQDGSDLPVVSYSSDAVEWPPAHKASYSRPDIN-KPLP--TSQP 151

Query: 409 S 411
           S
Sbjct: 152 S 152


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 548 PLTRASLTPCVVPWWIHLLXHLMMKAIPD 634
           P    S  P +VP W  L  H ++++IPD
Sbjct: 265 PANPMSTPPHIVPEWYFLPIHAILRSIPD 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,492
Number of Sequences: 28952
Number of extensions: 382696
Number of successful extensions: 1027
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)