Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M22
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    29   0.84 
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   3.4  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    26   7.8  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 690 LIQSHAAAVLQSCRSCIAVVSQPYRSRV 607
           L+  H    L  CR C+  + QP RSR+
Sbjct: 93  LVDKHFLPTLFKCRVCLTNIGQPERSRI 120


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 653 VAAVSQSCRNRT---AAVSQSYRSRVATVPQPCRNRVAVTSQPYCSHVAAVPQ 504
           +A  SQS R  +   A  ++SY  R+A V Q  RNR+A  S+     +AA P+
Sbjct: 575 IAPRSQSNRRESGVHAEGARSYADRLARVKQIHRNRMARASESDRHVIAAKPK 627


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 171 GADGAVGYSYKDPYAAFYNSLAGSVDQRQLAMYRELVSTQFRGYGLAGLAPG 326
           G DG +G    +P AA         D RQLA  ++ +     G G+ GL PG
Sbjct: 432 GKDGILGKLGGNPAAALKK------DPRQLAAMQKRMQAMGMGGGMPGLNPG 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,154
Number of Sequences: 5004
Number of extensions: 43726
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)