Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M22
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 31 1.2
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 30 2.0
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528... 30 2.0
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 29 3.6
06_01_1063 + 8602447-8602974 29 4.7
01_05_0163 - 18773962-18774297 29 4.7
01_06_0149 - 27011183-27011836 24 5.9
07_03_0863 - 22087178-22087474,22087614-22087770,22087851-220880... 29 6.2
06_03_1499 + 30593336-30593750,30594352-30595343 29 6.2
05_03_0307 + 12027505-12027565,12028300-12028925 29 6.2
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 419 DRGACSQKQFR*PPRGRRLHATRSSLAGGHVSG--REARQPVAAELRGDQLS 270
DRGAC F P GR+ R AG V G R RQP A E GD+ S
Sbjct: 110 DRGACF---FPAPEGGRKRKRERDE-AGSEVKGEDRRRRQPAAEEEDGDEAS 157
>11_05_0010 -
18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 683 RVMPQPCCSHVAAVSQSCRNRTAAVSQSYRSRVATVPQPCRNR 555
R P PCCS V ++ S R R+ A++ V + R R
Sbjct: 105 RPPPPPCCSFVVGLTSSARRRSRAIAAEIERIKKEVEEVSRRR 147
>02_01_0707 -
5276963-5278396,5280163-5280248,5280634-5281011,
5281453-5281690,5281787-5282052,5282148-5282526
Length = 926
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 363 ARDEEFTCWWARVRARGPPARSRGTAWRPALGT 265
A DEE WW VR +G A + W PA+ T
Sbjct: 726 ACDEEVRAWWEEVRTKG-HADKKDEPWWPAVDT 757
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 366 AARDEEFTCWWARV-RARGPP-ARSRGTAWRP 277
AA DE+ CW R+ R RG R +G+ WRP
Sbjct: 123 AAADEDEGCWLLRIARQRGADRQRWKGSRWRP 154
>06_01_1063 + 8602447-8602974
Length = 175
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 233 GGVRGPKAAGHVPRAGLHAVPRLRA-GGPRARTRAHQQVNSSSRAAAGRAE 382
GG R P AG R G A R G + R+ AH + ++++ AAG E
Sbjct: 38 GGARAPMVAGGGHRHGGAAAERGEGKGEKKRRSTAHPRSTATTKKAAGAEE 88
>01_05_0163 - 18773962-18774297
Length = 111
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 387 MTSARPAAARDEEFTCWWARVRARGPPARSRGTAWRPALGTW 262
MT+A A D++ WW R R R R W G W
Sbjct: 66 MTAAADGGA-DDDNRVWWPRCRRRHTRGRCARRGWTAEKGRW 106
>01_06_0149 - 27011183-27011836
Length = 217
Score = 23.8 bits (49), Expect(2) = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 687 IQSHAAAVLQSCRSCIAV 634
+ A QSCRSC+AV
Sbjct: 52 VVDQADCTAQSCRSCVAV 69
Score = 23.4 bits (48), Expect(2) = 5.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 528 QSCRSCTAVMSQPC 487
QSCRSC AV C
Sbjct: 61 QSCRSCVAVSLADC 74
>07_03_0863 -
22087178-22087474,22087614-22087770,22087851-22088088,
22088181-22088352
Length = 287
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = +3
Query: 72 LCLSAVRVD----SDLEITLLEDTNASQKRPALRPPCGADGAVGYS--YKDPYAAFYNSL 233
LC+ VD +D+ + L D S PA RP DG+ GYS Y ++ +
Sbjct: 225 LCVQQNPVDRPTMADVMVLLNSDATCSLPAPAPRPTSLIDGSSGYSTGYSTEWSGCNQLV 284
Query: 234 AGS 242
AGS
Sbjct: 285 AGS 287
>06_03_1499 + 30593336-30593750,30594352-30595343
Length = 468
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 274 SWSPRSSAATGWRASRPDTCPPASELLVA 360
SW+P S A T W + P T P + L+ A
Sbjct: 342 SWAPCSDALTNWTDAPPSTLPDIAALVRA 370
>05_03_0307 + 12027505-12027565,12028300-12028925
Length = 228
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 233 GGVRGPKAAGHVPRAGLHAVPRLRA-GGPRARTRAHQQVNSSSRAAAGRAE 382
GG R P AG R G R G R R+ AH + ++++ AAG E
Sbjct: 94 GGARAPMVAGGGHRHGGAVAKRGEGKGEKRRRSSAHPRSTATTKKAAGAEE 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,206,743
Number of Sequences: 37544
Number of extensions: 422208
Number of successful extensions: 1594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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