Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M22
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    29   3.2  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      29   3.2  

>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = -2

Query: 158 ERRPLLRGVRVLKQRDLQIRVDADGAETQTTLNIIMENLCHQRNLFFV 15
           ER+ LL  +++++Q +  + V     +   TLNI+ EN+ H+ +L+F+
Sbjct: 71  ERQMLLYFLKIMEQGNTPLNV-----QLLQTLNILFENIRHETSLYFL 113


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = -2

Query: 158 ERRPLLRGVRVLKQRDLQIRVDADGAETQTTLNIIMENLCHQRNLFFV 15
           ER+ LL  +++++Q +  + V     +   TLNI+ EN+ H+ +L+F+
Sbjct: 64  ERQMLLYFLKIMEQGNTPLNV-----QLLQTLNILFENIRHETSLYFL 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,776
Number of Sequences: 27780
Number of extensions: 285699
Number of successful extensions: 709
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)