Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M22
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06990.1 68416.m00830 DC1 domain-containing protein contains ...    34   0.14 
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    31   0.98 
At4g13510.1 68417.m02107 ammonium transporter 1, member 1 (AMT1....    30   2.3  
At3g24290.1 68416.m03050 ammonium transporter, putative similar ...    29   5.2  
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ...    28   6.9  
At4g28700.1 68417.m04101 ammonium transporter, putative similar ...    28   6.9  

>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 539

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 513 SCDMTAIRLRRDCDTVTTRLRYGCDTAAVRLRHGCG 620
           SC +    L  DC T+ T++++ CD   + L HG G
Sbjct: 394 SCTVCEFHLGMDCGTLPTKVKHTCDGHDLSLHHGAG 429



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 538 CDVTATRLRHGCGTVATRLRYDCDTAAVRLRHDCDTAAT*LQHGCGMT 681
           CD   T+    C      L  DC T   +++H CD     L HG G T
Sbjct: 385 CD-RPTQYVLSCTVCEFHLGMDCGTLPTKVKHTCDGHDLSLHHGAGNT 431



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 472 CDTTATRLRHDCGTAAT*LQYGCDVTATRLRHGCG 576
           C      L  DCGT  T +++ CD     L HG G
Sbjct: 395 CTVCEFHLGMDCGTLPTKVKHTCDGHDLSLHHGAG 429


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 513 SCDMTAIRLRRDCDTVTTRLRYGCDTAAVRLRHGCGT 623
           SC +    L  DC T+  ++++ CD   + L HG G+
Sbjct: 411 SCIVCDFALGMDCATLPRKVKHRCDDHVLSLHHGAGS 447


>At4g13510.1 68417.m02107 ammonium transporter 1, member 1 (AMT1.1)
           identical to SP|P54144 High affinity ammonium
           transporter (AtAMT1;1) {Arabidopsis thaliana}
          Length = 501

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 535 GCDVTATRLRHGCGTVATRLRYDCDTAAVRLRHDCDTAAT*LQHGCG 675
           GC V        CG VA  +   C+  A +L++D    A  L  GCG
Sbjct: 330 GCSVVEPWAAIICGFVAALVLLGCNKLAEKLKYDDPLEAAQLHGGCG 376


>At3g24290.1 68416.m03050 ammonium transporter, putative similar to
           SP|Q9SQH9|AT13_ARATH Ammonium transporter 1, member 3
           (AtAMT1;3) {Arabidopsis thaliana}; contains Pfam profile
           PF00909: Ammonium Transporter Family
          Length = 496

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 535 GCDVTATRLRHGCGTVATRLRYDCDTAAVRLRHDCDTAAT*LQHGCG 675
           GC V        CG VA+ +   C+  A  L++D    A  L  GCG
Sbjct: 333 GCSVVDPWAAIVCGFVASLVLIGCNKLAELLKYDDPLEAAQLHGGCG 379


>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
           protein Dof zinc finger protein, Oryza sativa,
           EMBL:AB028129
          Length = 372

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 265 CTES-WSPRSSAATGWRASRPDTCPPASELLVACSRRPR 378
           C +S W   S ++ G         P A+++L ACS RP+
Sbjct: 9   CMDSDWLQESESSGGSMLDSSTNSPSAADILAACSTRPQ 47


>At4g28700.1 68417.m04101 ammonium transporter, putative similar to
           SP|O04161 Ammonium transporter 1, member 2 (LeAMT1;2)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00909: Ammonium Transporter Family
          Length = 504

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 535 GCDVTATRLRHGCGTVATRLRYDCDTAAVRLRHDCDTAAT*LQHGCG 675
           GC V        CG VA  +   C+  A +L+ D    A  L  GCG
Sbjct: 341 GCSVVEPWAALVCGFVAAWVLMGCNRLAEKLQFDDPLEAAQLHGGCG 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,121
Number of Sequences: 28952
Number of extensions: 266342
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)