Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M19
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 212 6e-56
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 91 2e-19
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 60 5e-10
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 55 1e-08
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 55 1e-08
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 45 2e-05
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.087
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 1.1
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.4
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 2.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.3
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 5.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 5.7
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 7.6
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 212 bits (517), Expect = 6e-56
Identities = 99/136 (72%), Positives = 120/136 (88%)
Frame = +3
Query: 246 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 425
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 426 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQ 605
+DQNT IVGSTTGSNY VRILST+DRELLKPSASVAL +HSNALVD+ PPEADSSISML+
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124
Query: 606 ADEKPDVXYSDIGGMD 653
DE+PDV Y+D+GG+D
Sbjct: 125 PDERPDVSYADVGGLD 140
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 90.6 bits (215), Expect = 2e-19
Identities = 45/130 (34%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Frame = +3
Query: 276 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 446
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 447 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQADEKPDV 626
V ST G YYV I+S +D+++L+P SV LH + ++V + + D I++++ D+ P
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 627 XYSDIGGMDT 656
Y+DIGG+++
Sbjct: 189 SYADIGGLES 198
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 59.7 bits (138), Expect = 5e-10
Identities = 31/136 (22%), Positives = 69/136 (50%)
Frame = +3
Query: 246 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 425
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 426 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQ 605
+D IV +++G Y V + +D+ L V+L + ++ + P E D + +
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMS 122
Query: 606 ADEKPDVXYSDIGGMD 653
++ D+ ++ +GG++
Sbjct: 123 IEDPGDISFAGVGGLN 138
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 55.2 bits (127), Expect = 1e-08
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +3
Query: 327 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDR 503
+ QRN L +EE++ +Q +G+ ++ + +N +V Y V I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 504 ELLKPSASVALHKHSNALVDVXPPEADSSISMLQADEKPDVXYSDIGGMD 653
+ +KP+ VAL S L+ + P + D +S++ ++ PD Y +GG++
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLE 151
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 55.2 bits (127), Expect = 1e-08
Identities = 38/191 (19%), Positives = 92/191 (48%), Gaps = 21/191 (10%)
Frame = +3
Query: 141 IETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY 320
+ T+EE+ + + ++++GL Q ++L ++ + L+ ++ ++ + +
Sbjct: 1 MSTLEELDALDQSQQGGSSNNEGLDGI-EQEILAAGIDELNSRTRLLENDIKVMKSEFQR 59
Query: 321 IKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVD-------------QNT------- 440
+ E+ + ++ QE++ + +P ++G +E +D QN+
Sbjct: 60 LTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGK 119
Query: 441 -GIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQADEK 617
++ ++T ++ ++ ++ E L P + ++K S ++D P E DS + ++ DEK
Sbjct: 120 SAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEK 179
Query: 618 PDVXYSDIGGM 650
P YSDIGG+
Sbjct: 180 PTERYSDIGGL 190
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/76 (25%), Positives = 40/76 (52%)
Frame = +3
Query: 420 EAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISM 599
++ ++N ++ + + V + + ++ V ++ A+ PP+ D S++M
Sbjct: 108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTM 167
Query: 600 LQADEKPDVXYSDIGG 647
+Q +EKPDV Y D+GG
Sbjct: 168 MQVEEKPDVTYGDVGG 183
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.087
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 458 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFIFNVLFLY 306
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 228 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 386
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -1
Query: 389 LYALYFFLCMQIFFLQVSLFIFNVLFL 309
+++L+FFLCM+ FF +++ F LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 379 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 281
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 177 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 356
EK+ + K L A + E+E L + Q+ LE +E K E++ LK+E
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 357 LHAQEEVKR 383
Q+E++R
Sbjct: 651 EKKQQELER 659
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +3
Query: 612 EKPDVXYSDIGGMDTXNXN-*XSC*XPLTHVXXXG-XSVXXPSGWAHVWTPXCGK 770
E P+V +SDIGG + S PLTH V P G P C K
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSK 595
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 345 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 446
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 7.6
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Frame = +3
Query: 171 LPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK 350
L +K + +TD+ +S +E S+++ TK + + + +K E+ L +
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSE 376
Query: 351 EYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASV 530
QE+ + IQSV + +D+ + I+ + +L+ + +LK
Sbjct: 377 HLKSLQEQYEHIQSVYKNV-----LLDRESYIMRLGNKISENNELLN--ENRVLKEKLQT 429
Query: 531 ALHKHSNALVDVXPPEADSS---ISMLQADEKPD 623
L K + + A++S +SM +ADE+ D
Sbjct: 430 YLDKKESNVTSKIKSTAENSSKPLSMNEADERKD 463
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,172
Number of Sequences: 5004
Number of extensions: 51330
Number of successful extensions: 172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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