Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M19
(833 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 226 1e-59
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 92 5e-19
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 92 5e-19
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 64 1e-10
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 63 3e-10
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 57 1e-08
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 57 2e-08
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 55 7e-08
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 54 9e-08
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 41 0.001
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 40 0.002
At5g55490.1 68418.m06911 expressed protein 36 0.025
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 34 0.10
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.71
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.71
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 31 0.94
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 31 1.2
At5g32169.1 68418.m03692 hypothetical protein 30 2.2
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea... 29 2.9
At1g56610.1 68414.m06511 syntaxin-related family protein similar... 29 2.9
At5g36780.1 68418.m04406 hypothetical protein 29 3.8
At5g36690.1 68418.m04391 hypothetical protein 29 3.8
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 29 3.8
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 5.0
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 29 5.0
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /... 28 6.6
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 28 6.6
At1g58120.1 68414.m06589 expressed protein 28 6.6
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 8.8
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 8.8
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 8.8
At1g77890.1 68414.m09078 expressed protein 28 8.8
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 28 8.8
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 28 8.8
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 226 bits (553), Expect = 1e-59
Identities = 107/136 (78%), Positives = 120/136 (88%)
Frame = +3
Query: 246 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 425
+ EDLY + K L+R LEF ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E
Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85
Query: 426 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQ 605
VDQN GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDV PPEADSSIS+L
Sbjct: 86 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145
Query: 606 ADEKPDVXYSDIGGMD 653
EKPDV Y+DIGG D
Sbjct: 146 QSEKPDVSYNDIGGCD 161
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 91.9 bits (218), Expect = 5e-19
Identities = 48/151 (31%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Frame = +3
Query: 222 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 380
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 381 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 560
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 561 DVXPPEADSSISMLQADEKPDVXYSDIGGMD 653
+ E D +S+++ ++ P Y+DIGG++
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLE 194
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 91.9 bits (218), Expect = 5e-19
Identities = 48/151 (31%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Frame = +3
Query: 222 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 380
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 381 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 560
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 561 DVXPPEADSSISMLQADEKPDVXYSDIGGMD 653
+ E D +S+++ ++ P Y+DIGG++
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLE 194
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/129 (26%), Positives = 66/129 (51%)
Frame = +3
Query: 264 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 443
++Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 SEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 444 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQADEKPD 623
IV +++G Y V S +D+E L V L + ++ P E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 624 VXYSDIGGM 650
+ YS +GG+
Sbjct: 136 ISYSAVGGL 144
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 62.9 bits (146), Expect = 3e-10
Identities = 35/129 (27%), Positives = 65/129 (50%)
Frame = +3
Query: 264 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 443
T Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 TDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 444 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQADEKPD 623
IV +++G Y V S +D+E L V L + ++ P E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 624 VXYSDIGGM 650
+ YS +GG+
Sbjct: 136 ISYSAVGGL 144
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 57.2 bits (132), Expect = 1e-08
Identities = 37/168 (22%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Frame = +3
Query: 213 AFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 392
+F G Q + ++D+ + L + L+ + + + ++K++ QE++K +
Sbjct: 10 SFEGDQ-LASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQ 68
Query: 393 VPLVIGQFLEAVD------------------QNTG---IVGSTTGSNYYVRILSTIDREL 509
+P ++G +E ++ Q G ++ ++T ++ ++ +D +
Sbjct: 69 LPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDT 128
Query: 510 LKPSASVALHKHSNALVDVXPPEADSSISMLQADEKPDVXYSDIGGMD 653
LKP V ++K S ++D P E DS + ++ DEKP Y+DIGG++
Sbjct: 129 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 176
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 56.8 bits (131), Expect = 2e-08
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 21/158 (13%)
Frame = +3
Query: 243 LESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 422
+ +ED+ + L + L+ + E + K++ QE++K + +P ++G +E
Sbjct: 20 MSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVE 79
Query: 423 AVDQNTG---------------------IVGSTTGSNYYVRILSTIDRELLKPSASVALH 539
++ N ++ ++T ++ ++ +D + LKP V ++
Sbjct: 80 ILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVN 139
Query: 540 KHSNALVDVXPPEADSSISMLQADEKPDVXYSDIGGMD 653
K S ++D P E DS + ++ DEKP Y+DIGG++
Sbjct: 140 KDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 177
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 54.8 bits (126), Expect = 7e-08
Identities = 33/126 (26%), Positives = 60/126 (47%)
Frame = +3
Query: 276 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 455
+LQR+ ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 456 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQADEKPDVXYS 635
Y V I +ID L PS VAL S L V P + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 636 DIGGMD 653
IGG+D
Sbjct: 162 MIGGLD 167
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 54.4 bits (125), Expect = 9e-08
Identities = 33/126 (26%), Positives = 60/126 (47%)
Frame = +3
Query: 276 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 455
+LQR L ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 456 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSISMLQADEKPDVXYS 635
Y V I +ID + PS VAL S L V P + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 636 DIGGMD 653
IGG+D
Sbjct: 162 MIGGLD 167
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 40.7 bits (91), Expect = 0.001
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Frame = +3
Query: 171 LPEKDDQVTDSKGLA-FAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLK 347
L E D + + GL ++ P E E +DL KK+ + E Q +L
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLA---KKINDLCGIKESDTGLAPPSQWDLV 74
Query: 348 KEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG----IVGSTTGSNYYVRILSTIDRELLK 515
+ QEE PL + + + + NT ++ + + V + + ++
Sbjct: 75 SDKQMMQEEQ------PLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIE 128
Query: 516 PSASVALHKHSNALVDVXPPEADSSISMLQADEKPDVXYSDIGG 647
V + ++ + PP+ D S++M+ +EKPDV Y+D+GG
Sbjct: 129 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 172
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 570 PPEADSSISMLQADEKPDVXYSDIGG 647
PP+ D S++M+ +EKPD YSDIGG
Sbjct: 184 PPKIDPSVTMMTVEEKPDATYSDIGG 209
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 177 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 356
+K ++ D + +A G Q +SE L LQR+ EF + Q+E + Q L++ +
Sbjct: 269 DKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQRLKEFSQEQQEDLAKRQEKLQEVH 328
Query: 357 LHAQEEVK 380
H E K
Sbjct: 329 DHLFENSK 336
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +3
Query: 153 EEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDE 332
E + L D+V D+ G+ L SED ++ K R LE+LE+QEE IK+E
Sbjct: 463 EAVQATLSSLPDEVVDTVGVT--------ALSSEDSVSERK---RKLEYLEMQEELIKEE 511
Query: 333 QRNLKKEYLHAQEEVKRIQSVPL 401
+ ++E +E + V L
Sbjct: 512 EEEEEEEMAKMKESASSQKDVAL 534
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/50 (24%), Positives = 32/50 (64%)
Frame = +3
Query: 240 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 389
+++ ++ K L++ +++ E++++ IKD+ L++E + EE+ RI+
Sbjct: 720 QMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIK 769
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 240 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 386
E E E L K KL E E+Q + D +LK + HAQEE +R+
Sbjct: 380 EGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRL 428
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 31.1 bits (67), Expect = 0.94
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 240 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFL 419
E E + L + KL + E L V+ + + L++E HAQ+ KR+ S L +
Sbjct: 292 ETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKI 351
Query: 420 EAVDQNTGIVGS 455
+ V++ ++ S
Sbjct: 352 KTVEEQCALLES 363
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +3
Query: 141 IETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY 320
++ + + L D+V D+ G+ L SED ++ + R LE+LE+QEE
Sbjct: 480 VKAEDAVRATLSSLPDEVVDTVGIT--------SLPSEDPVSERR---RKLEYLEMQEEL 528
Query: 321 IKDEQRNLKKEYLHAQEEVKRIQSV 395
IK+E+ +KE +EE+ RI+ V
Sbjct: 529 IKEEE---EKE----EEELTRIKDV 546
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -1
Query: 368 LCMQIFFLQVSLFIFNVLFLY 306
LC ++F +++SL++F++ FLY
Sbjct: 204 LCSRLFVIRISLYLFSIQFLY 224
>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P35579 myosin heavy chain,
nonmuscle type A (Cellular myosin heavy chain, type A,
Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
Length = 629
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/71 (21%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +3
Query: 153 EEIG--IILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY-- 320
E++G ++L +++++ + + A Q DEL+ L +K++ ++E ++++EY
Sbjct: 387 EKVGALLLLSQQEERHLHEENVNAALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQS 446
Query: 321 IKDEQRNLKKE 353
++D+ ++E
Sbjct: 447 LRDKMSGTREE 457
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
proteins At3g54160, At1g47920 (syntaxin SYP81),
At5g41830, At3g44180, At3g58890, At1g48390, At3g59270
[Arabidopsis thaliana]; contains a novel domain similar
to F-box that is shared among other proteins in
Arabidopsis
Length = 535
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -1
Query: 389 LYALYFFLCMQ--IFFLQVSLFIFN--VLFLYF*EL*HSLEFLVLCV*IFRFEFIKRLRT 222
L+ Y FL IF + F+++ VL L L ++ L+LC +F F F++
Sbjct: 10 LFGFYLFLMKSSSIFPQRPFTFLYDLWVLLLVLRFLFSLIQILILC--LFNFRFVEMTSN 67
Query: 221 SKRQAF*VCDL 189
+K++ +CDL
Sbjct: 68 NKKKKTELCDL 78
>At5g36780.1 68418.m04406 hypothetical protein
Length = 576
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +3
Query: 144 ETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELES-----EDLYTKYKKLQRMLEFLEV 308
ET + GIIL EK+ + K +A + +EL++ DL K K Q + L++
Sbjct: 194 ETEKPDGIILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIRVLDL 253
Query: 309 QEEYIKDEQRNLKKEYLHAQEEVKRIQ 389
++ +I + K++ +A+ ++ RIQ
Sbjct: 254 EKAHILE-----KRDRFYARIKMLRIQ 275
>At5g36690.1 68418.m04391 hypothetical protein
Length = 576
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +3
Query: 144 ETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELES-----EDLYTKYKKLQRMLEFLEV 308
ET + GIIL EK+ + K +A + +EL++ DL K K Q + L++
Sbjct: 194 ETEKPDGIILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIRVLDL 253
Query: 309 QEEYIKDEQRNLKKEYLHAQEEVKRIQ 389
++ +I + K++ +A+ ++ RIQ
Sbjct: 254 EKAHILE-----KRDRFYARIKMLRIQ 275
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 453 STTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVXPP 575
+TT ++Y+R L+ + ++ KP+ S + +N +D+ PP
Sbjct: 25 NTTNRDHYLRQLNKLSHKISKPTNSSSSVSVANREIDLPPP 65
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 120 STRNLLAIETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEF 299
S + L ++ EE+ + +K + + ++ L + E E E + K ++L++ E+
Sbjct: 521 SELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKF--EAEWEHIDVKREELRKEAEY 578
Query: 300 LEVQEE----YIKDEQRNLKKE 353
+ Q E Y+KDE+ N+K+E
Sbjct: 579 ITRQREAFSMYLKDERDNIKEE 600
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 267 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 446
K +Q EFL +Q + E +L+K + +E +R+Q + + LE +++G+
Sbjct: 647 KLSSIQDENEFLRMQAIQNRAEMESLQKSLSFSLDEKERLQKLVDNLSNELEGKIRSSGM 706
Query: 447 VG 452
VG
Sbjct: 707 VG 708
>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
and to SEC14 cytosolic factor (SP:P53989) [Candida
glabrata]
Length = 376
Score = 28.3 bits (60), Expect = 6.6
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Frame = +3
Query: 120 STRNLLAIETMEEIGIILPEKDDQVTDSKGLA-FAGPQSFDELESEDLYTKYKKLQRMLE 296
S N +E + ++ D+ D L F + FD +S++ + Y K + +
Sbjct: 21 SPNNEEMVEAFRNLLLLHGHLPDKHGDHNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDYK 80
Query: 297 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGS--N 470
+ +++ +E +KK Y H +V + P+ I + L D N + +T N
Sbjct: 81 VDLISQKFKFEEYGEVKKHYPHGFHKVDK-TGRPIYI-ERLGMTDLNAFLKATTIERYVN 138
Query: 471 YYVRILSTIDRELLKPSASVALHKHSNALVDV 566
Y+++ L P+ S+A KH ++ +
Sbjct: 139 YHIKEQEK-TMSLRYPACSIASDKHVSSTTTI 169
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/51 (25%), Positives = 33/51 (64%)
Frame = +3
Query: 237 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 389
D LE ++ ++ +K+ + LE+ +EY++D +R +++ +EE+K+++
Sbjct: 581 DRLEVDERCSRLEKIDQ----LEIFQEYLRDLEREEEEKKKIQKEELKKVE 627
>At1g58120.1 68414.m06589 expressed protein
Length = 420
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 228 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 407
Q F+ + E + + + E +E +K+E+ + K EE+ R +S+ +V
Sbjct: 313 QKFEMYKIETVNDEMSLESEKMGMTEWLKENVKEEEYVVMKAEAEMVEEMMRSKSIKMVD 372
Query: 408 GQFLEAVDQNTGIVG 452
FLE + G+ G
Sbjct: 373 ELFLECKPKGLGLRG 387
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 471 YYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSIS 596
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 471 YYVRILSTIDRELLKPSASVALHKHSNALVDVXPPEADSSIS 596
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 297 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 407
FLEV Y++++++ L+KE + + V+ P+VI
Sbjct: 106 FLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVI 142
>At1g77890.1 68414.m09078 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 240 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 356
EL++E L +KLQ +E L+ + + RNLK+ Y
Sbjct: 66 ELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERY 104
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 237 DELESEDLYTKYKKLQRMLEFL-EVQEEYIKDEQRNLKKEYLHAQEEVK 380
+ +++ +K + L + LE + E QE+ K +QRNL+K + ++K
Sbjct: 67 ERIQNPSASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLK 115
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 246 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 422
E ED K ++ ++ E + +EE K E+ N KKE +EEVK ++ I Q +E
Sbjct: 189 EEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVK-VEVTTKTITQVVE 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,028
Number of Sequences: 28952
Number of extensions: 261748
Number of successful extensions: 831
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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