Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M14
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 76 5e-15
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 31 0.15
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.46
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 30 0.46
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 28 1.4
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 27 2.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.2
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 26 5.6
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 26 7.5
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 7.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 9.9
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 76.2 bits (179), Expect = 5e-15
Identities = 56/150 (37%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Frame = +1
Query: 286 QKIVGAVKSLEALEMVISEAVKITKWELTEEGELVANNGSHEAVLYRSI--PDSGVPQSE 459
Q+ A+ SL A M+ +I + LT EGE + NGSHEA +Y I SG+ E
Sbjct: 37 QEAQSAILSLAAKNMIEFSRHEIEIYNLTAEGENICANGSHEAKVYNEICASMSGLNIGE 96
Query: 460 AMKMVPN-AKVGFSKAMSSGWIYIDKSSGPPLVKRKVDSITDIVQENLSEIRKGIDNLSE 636
K + N A +G +A GWI K G LVK DSITD + LSEI++
Sbjct: 97 LKKKLGNSAGIGQGRAFKLGWI---KKDGDKLVK-NTDSITDETPKVLSEIKEHGTISDS 152
Query: 637 NVRNDYXKRXLLQEVTIKSFLLSKGPQFAI 726
D KR L++ I F L KGP F++
Sbjct: 153 KTLTDLKKRKLVERNKIMYFSLRKGPNFSL 182
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 31.5 bits (68), Expect = 0.15
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 550 LVKRKVDSITDIV---QENLSEIRKGIDNLSENVRNDYXKRXLLQEVTIKSFLLSK 708
++ K++S D + QE L+++R N S+N+R R L + VT K++LLS+
Sbjct: 976 IIASKIESTDDNLRKLQERLADLRTRERNASDNLRLRALMRQLEEAVTQKNYLLSQ 1031
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.46
Identities = 26/94 (27%), Positives = 47/94 (50%)
Frame = -1
Query: 464 IASDCGTPLSGILLYNTASWLPLLATSSPSSVNSHFVILTASEITISRASKLFTAPTIF* 285
++S T S + +++S P ++S SS++SH ++ + +S + T
Sbjct: 372 VSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNST--- 428
Query: 284 CSSLNSSHNFKVSALSLFSRYFKILSFNSILSSS 183
SS +SSH+ S SL S+ S +S+L+SS
Sbjct: 429 -SSRSSSHSSSHSLSSLSSKPILTASSSSLLTSS 461
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.9 bits (64), Expect = 0.46
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +1
Query: 196 MELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKITKWELTE 375
+E E KY +N + TL C E EH +E L+ V S+ + T WE E
Sbjct: 1124 VEHKEENKKY-DNVNIQKTLAKCAEEFAEHTNF----NKVELLDFVYSK-LSSTIWENRE 1177
Query: 376 EGELVANNGSHEAVLYRSIPDSGV 447
E +L+ +RS+ D GV
Sbjct: 1178 EHDLLKIVRDVRQTFFRSLEDMGV 1201
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 337 SEAVKITKWELTEEGELVANNGSHEAVLYRSIP---DSGVPQSEAMKMVPN 480
+EA + + + E +L ++GS E + S+P +S +PQS A+ PN
Sbjct: 10 TEASEDAENDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALNTTPN 60
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +1
Query: 439 SGVPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRKVDSITDIVQENLSEIRKG 618
SG S A K + K G +SS W+ D++ ++KR +DS+ S IR G
Sbjct: 89 SGTFHSIAYKYL--VKYGKHIGLSSNWLIADRNDTQAIMKRLLDSLKKAKNPIASGIR-G 145
Query: 619 IDNLSENVRNDYXK 660
+ +N N K
Sbjct: 146 QELTPQNALNRITK 159
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.4
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = -1
Query: 488 TFAFGTIFIASDCGTPLS---GILLYNTASWLPLLATSSPSSVNSHFVILTASEITISRA 318
TF+ + ++S +P S I +T+S +TSSPSS++S +IS +
Sbjct: 572 TFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISS----------SISSS 621
Query: 317 SKLFTAPTIF*CSSLNSSHNFKVSALSLFSRYFKILSFNSILSS 186
S + ++PT S + SS + + S+ S + +S LS+
Sbjct: 622 STILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLST 665
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 169 LKYSGEELKMELNERILKYLENSDKA--DTLKLCEEFNEEHQKIVGAVKSLEAL 324
L+ SG LK E + LK KA + LK + F+E+HQ+++GA+ + L
Sbjct: 440 LRISGS-LKEEQSYYGLKNSIKQIKAFENKLKYIQSFHEKHQQLIGALSEVYGL 492
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 568 DSITDIVQENLSEIRKGIDNLSENVRNDYXKRXLLQEVTIKSF---LLSKGPQFAIXXKN 738
DS+T++VQ+ + + +L +++ N Y + L+ + + + ++ K Q A+ N
Sbjct: 191 DSVTEMVQDYTPSCSRDVKSLLDHLYNSYFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHN 250
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 301 AVKSLEALEMVISEAVKITKWELTEEGELVANNGSHEAV---LYRSIPDSGVPQSEAMKM 471
A+ L L+++ +E+ W + N H A +YRS+ G+P S+ + M
Sbjct: 7 ALLLLNLLQIIAAESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILM 66
Query: 472 VPNAKVGFSKAMSSGWIY 525
+ + S+ + G ++
Sbjct: 67 IADDYACNSRNLFPGTVF 84
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 181 GEELKMELNERILKYLENSDKADTLKLCEEF 273
G E+++ + E L+YLE DT+K EF
Sbjct: 171 GTEIRLFMKEDQLQYLEEKTIKDTVKKHSEF 201
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 9.9
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Frame = -1
Query: 593 SCTMSVIEST-LRLTRGGPLDLSMYIHPDDMALLNPTFAFGTIFIASDCGTPLSGILLYN 417
S T S ST + ++ G D+ P T ++ +S T +G YN
Sbjct: 165 SATSSFPYSTDVSVSTGTSTDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYN 224
Query: 416 TASWLPLLATSSPSSVNS-----HFVILTASEITISRAS 315
T+S+LP SS S +S + T++ +T+S +S
Sbjct: 225 TSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSS 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,371
Number of Sequences: 5004
Number of extensions: 56693
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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