Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M14
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231... 47 2e-05
07_01_0624 + 4651995-4654715 32 0.64
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 31 1.1
08_02_0075 - 11953723-11956203,11958213-11958512 30 2.6
12_02_1261 + 27410921-27413401 29 4.5
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 29 5.9
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 28 7.8
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 28 7.8
>10_07_0116 -
13022648-13022701,13022781-13022835,13023050-13023175,
13023274-13023340,13024104-13024200,13024362-13024461,
13024527-13024611,13024679-13024755,13024888-13024926,
13025001-13025038,13025118-13025208,13025536-13025628,
13025726-13025781,13025844-13025915,13026078-13026134,
13026397-13026495,13026599-13026964
Length = 523
Score = 47.2 bits (107), Expect = 2e-05
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +1
Query: 334 ISEAVKITK--WELTEEGELVANNGSHEAVLYRSIPDSGVPQSEAMKMVPNA-KVGFSKA 504
+S ITK W LT+E + GS EA L +IP G + + + + +G A
Sbjct: 77 LSAPQDITKETWVLTDEAKGYVAGGSPEAQLVAAIPPEGASKDVLREKLGSVFDIGMKTA 136
Query: 505 MSSGWIYIDKSSGPPLVKRKVDSITDIVQENLSEIRKG 618
+ WI +K + LV RKV++I D +QE L + G
Sbjct: 137 AKNKWIGFEKGN-KDLVLRKVNTIKDDLQEQLKSLESG 173
>07_01_0624 + 4651995-4654715
Length = 906
Score = 31.9 bits (69), Expect = 0.64
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 509 HLD-GYT*INQVDRPSSNVKLIQLQTLY-RRTLVKLEKV*IIYQKM*EMTIXKGXFYKR* 682
+LD GYT + ++ PSS KL LQTLY ++++L + K+ + I G F K
Sbjct: 610 YLDLGYTKLKEI--PSSIGKLSNLQTLYLNGSVLELPSETTMLTKLHHLLIDVGRFGKSA 667
Query: 683 PLKASCCRRXPNLR 724
K SC LR
Sbjct: 668 SSKISCLEHLQTLR 681
>01_01_0777 -
6017131-6017243,6018069-6018339,6018432-6018617,
6018703-6018735,6018827-6018925,6019042-6019281,
6019747-6020064,6020197-6020254,6020333-6020389,
6020577-6020792,6020885-6021000
Length = 568
Score = 31.1 bits (67), Expect = 1.1
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Frame = +1
Query: 196 MELNERILKYL--ENSDKADTL--KLCEEFNEEHQKIVGAV-KSLEALEMVISEAVKITK 360
+ LN +LK + ENSD + L ++ N++H+ + KSL+ + E + +
Sbjct: 414 LRLNTAVLKNIIKENSDDRRVILNNLSQKMNQDHRFSTEVMEKSLQMMHQHFGEYNRCSA 473
Query: 361 WEL-TEEGELVANNGSHEAVLYRSIPDSGVPQSEAMKMVPNAKV 489
E+ EL ANNG A+ ++ + Q P AKV
Sbjct: 474 LNQDNEKNELKANNGHSMALEWKRVTIHMYSQRNKRPEAPLAKV 517
>08_02_0075 - 11953723-11956203,11958213-11958512
Length = 926
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 550 LVKRKVDSITDIVQENLSEIRKGIDNLSENVRNDYXKRXLLQEV 681
L+ K+D+I Q+ ++ R+ +DN +EN RN R ++++
Sbjct: 154 LLLDKLDAIKQAAQDASTDKRETVDNFTENPRNKVFPREEMKDI 197
>12_02_1261 + 27410921-27413401
Length = 826
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 397 NGSHEAVLYRSIPDSG--VPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRK 564
NG++ A S+ D G Q KMVP A V S ++ + D + P K+K
Sbjct: 604 NGTNVAAASNSLKDEGQRADQPSLKKMVPGANVNHSSGEATNSAFPDIAYSTPKKKKK 661
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 28.7 bits (61), Expect = 5.9
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +1
Query: 175 YSGE-ELKMELNERILKYLENSDK-ADTL-KLCEEFNEEHQKIVGAVKSLEALEMVISEA 345
Y GE + K E+ ++ +E D+ A T +L +F E+ +KI+ K + +I +
Sbjct: 264 YFGELKQKNEIEVKLATTMEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDL 323
Query: 346 VKITKWELTEEGELVANNGSHEAVLYRSIPDSGVPQSEAMKMVPN 480
+ + E + NG A+ R+IP + + SE + N
Sbjct: 324 MLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKEATSN 368
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 201 IERKNFKVSRKQRQS*HFKIMRRIQRRTSKNSWCCKKFGS 320
I+ K F +S+K + HF+++R+I +R + + FGS
Sbjct: 319 IQSKAFSLSKKSDE--HFEVLRKIVQRCDGSPLAAQSFGS 356
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 199 ELNERILKYLENSDKADTLKLCEEFNEEHQKIV 297
+L E I+ Y E+S + LK C E+ +H K+V
Sbjct: 356 KLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLV 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,331,578
Number of Sequences: 37544
Number of extensions: 319373
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -