Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M14
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   2e-21
SB_33952| Best HMM Match : Lectin_C (HMM E-Value=3.1)                  47   2e-05
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.37 
SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)                 30   2.0  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)             29   6.1  
SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)                    29   6.1  
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score =  100 bits (239), Expect = 2e-21
 Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
 Frame = +1

Query: 298 GAVKSLEAL--EMVISEAVKITKWELTEEGELVANNGSHEAVLYRSIPDSGVPQSEAMKM 471
           GA  +L  +   ++ +E  ++    LT+EG  +A NGSHEA ++ +IP+ G+PQS    +
Sbjct: 6   GAAANLAGVGSRLINTEQRQVQSLVLTDEGNQIAENGSHEAWVFDAIPEGGMPQSNIKSL 65

Query: 472 VPNAKVGFSKAMSSGWIYIDK-SSGPPLVKRKVDSITDIVQENLSEI-RKGIDNLSENVR 645
             +A +GFSKAMSSGW+ IDK + G P V +KV+ I D VQ  L ++     +++ E   
Sbjct: 66  GEHANIGFSKAMSSGWLRIDKQAEGGPRVFKKVEKIDDSVQLMLLKVLNHDYNDIPEAKI 125

Query: 646 NDYXKRXLLQEVTIKSFLLSKGPQFAI 726
            +  KR L+    IKSF ++KG  F++
Sbjct: 126 KELKKRKLVTTQVIKSFYVTKGKAFSL 152


>SB_33952| Best HMM Match : Lectin_C (HMM E-Value=3.1)
          Length = 311

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
 Frame = +1

Query: 232 NSDKADTLKLCEEFNEEHQ--KIV-GAVKSLEALEMVISEAVKITKWELTEEGELVANNG 402
           NS   ++L+   + N+ H   KI  G V    + E++ +E  ++    LT+EG  +A NG
Sbjct: 231 NSLGWESLEQRRQLNQAHMFYKIYHGLVGISFSPELINTEQRQVQSLVLTDEGNQIAENG 290

Query: 403 SHEAVLYRSIPDSGVPQS 456
           SHEA ++ +IP+ G+PQS
Sbjct: 291 SHEAWVFDAIPEGGMPQS 308


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 517  WIYIDKSSG--PPLVKRKVDSITDIVQENLSEIRKGIDNLSENVRNDYXKRXLLQEVTIK 690
            W   D S+   P   +++  S   I Q+NLS  +  ++N+ E+V   + KR  +++   K
Sbjct: 1353 WFAHDHSNEETPTRPQKQSSSHNPISQDNLSAWQSNVENIPEDVDERFFKRKWIRDTDSK 1412

Query: 691  SFLLSKG 711
               L+KG
Sbjct: 1413 YIKLAKG 1419


>SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 344 ASEITISRASKLFTAPTIF*CSSLNSSHNFKVSALSLFSRYFKILSFNSILSSSP 180
           +S+ITI+RAS LF+  ++   SSL   HN  +  +S  S  F I       +S P
Sbjct: 182 SSDITITRASNLFSTSSVPQNSSL--GHNTSLVTISRASNTFSISGIPQSSASGP 234


>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
          Length = 1318

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = +1

Query: 172 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVK 351
           +Y+  + KMELNE I+ Y   +      K CE   +E ++I+  +    +   ++  A++
Sbjct: 157 RYTFNKQKMELNESIVTYA--ARMRYQAKKCEFGTQEDERILEHLNQTISDGDLVKRAIE 214

Query: 352 ITKWELTEEGELVANNGSHEAV 417
             +W LT   E + N G  E +
Sbjct: 215 -KRWNLT---EFIENAGQKEKI 232


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
 Frame = +1

Query: 199  ELNERILKYLENSDKADT-LKLCEEFNEEHQKIVGAVKSLE-ALEMV--ISEAVKITKWE 366
            +LN   LK +   D+ D  +K+C+EF   H+++VG +  +E  +E +  +SE V  T+ +
Sbjct: 1855 DLNAGKLKRVR--DRVDQQVKMCDEFAPLHEEVVGWLAEMEPVVENMRPVSEDVHATRQQ 1912

Query: 367  LTE 375
            L E
Sbjct: 1913 LQE 1915


>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
          Length = 712

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
 Frame = +1

Query: 166 KLKYSGEELKME---LNERILKYLENSDKADTLKLCEEFNE-EHQKIVGAVKSLEALEMV 333
           K K S +E K E   + E+ L+YLE S +   L+ CE  N+ +H K+V      + LEM 
Sbjct: 580 KYKESLKEAKAENRAMREK-LQYLEKSSEEADLQACEIENQLKHAKMVIQQLKDQELEMA 638

Query: 334 --ISEAVKITKWELTEEGELVANNGSHE 411
             I E  +  +    +   L  NN S E
Sbjct: 639 KQIDELEQHIETLKQQNNSLQRNNSSFE 666


>SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)
          Length = 949

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
 Frame = +1

Query: 283 HQKIVGAVKSLEALEMVISEAVKITKWELTEEGELVANNGSHEAVLYRSIPDSGVPQSEA 462
           H    GA  S++    ++SEA  +  +++   GE++A+N S   V   ++   G  +   
Sbjct: 500 HALTCGARDSVQKALRILSEATTLPDFQMIWLGEIIASNNSAREVELTTLRGPGDEEFSP 559

Query: 463 MKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRKVDSITDIVQENLSE-IRKGID 624
               P +    S        +  +   P ++  K  ++TD   E L E +R G++
Sbjct: 560 PPSPPRSSTNQSARSRHVASWSSRDLRPAVMTPK-SNVTDANIECLIEKMRSGLE 613


>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 238 DKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKI 354
           DK+D  K    FNE ++K++G  K  EA  + I E V++
Sbjct: 203 DKSDYPKSSTYFNETNKKVIGKFKD-EAAGIAICEFVRL 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,800,596
Number of Sequences: 59808
Number of extensions: 391601
Number of successful extensions: 1258
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)