Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M13
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    86   5e-18
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    29   0.62 
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    28   1.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    27   3.3  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   5.8  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   7.6  

>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
 Frame = +3

Query: 60  LISEFPDKFGSCVPHTTRPRRDYEVDGRDYHLVASREQMERDIQNHLFIEAGQYNDNLYG 239
           L+ +  DK G  V HTTR  R  E DG DYH V ++E+ ++ +    F+E   ++ N+YG
Sbjct: 38  LLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFV-TKEEFQKLVAEEKFVEWAVFSGNMYG 96

Query: 240 TSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPIAIFIKPKSVESI-MEMNKRMTEEQ 416
           TS+ +++E+    K  ILD+    + +++ + +    +F+ P S+E + + +  R TE +
Sbjct: 97  TSIMAIQELEAVNKKAILDIDLQGVLQVKASPIDAQYVFLAPPSIEQLEVRLRGRGTENE 156

Query: 417 AK--KTYERALKMEQEFAE---YFTAVVTGDTPEEIYSKVKAV 530
           +   +  ERA + E E++E    F A++  D  E+ Y +++A+
Sbjct: 157 SAILQRLERA-RAEIEYSEKPGNFDALIVNDDVEKAYKQLEAI 198


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +3

Query: 114 PRRDYEVDGRDYHLVASR-EQMERDIQNHLFIEAG-QYNDNLYGTSVASVREVAEKGKHC 287
           PR     D +  H V+S+  +++ D  N  F E   +  D  Y   +   +      KH 
Sbjct: 6   PRVKRRTDTQYLHSVSSKLPKVDFDTNNEEFFEEEFEIYDPFYRAELPCPKPSLSISKHS 65

Query: 288 ILDVSGNAIKRLQVAQLFPIAIFIKPKSVESIMEMNKRMT 407
           I  V  N  KRL++  L     F+ P S   + E  ++ T
Sbjct: 66  IAKVPSNVNKRLELQLLLTSGTFL-PNSRPYLSERVRKHT 104


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = +3

Query: 57  DLISEFPDK----FGSCVPH-TTRPRRDYEVDGRDYHLVASREQMERDIQNHL--FIEAG 215
           DLIS F  K      S  PH TT P    E  GR   L+ SR Q  RDI  HL   I   
Sbjct: 92  DLISYFFLKQRYALSSLKPHLTTIP----ETSGRVVQLIWSRLQGNRDIVQHLPQMIAIC 147

Query: 216 QYNDNLYGTSVASVREVAEKGKHCILDVSGN 308
            Y  NL   S++S+ E++++  +   D S +
Sbjct: 148 TYPSNL-RKSLSSLAELSDEILYLAQDKSAD 177


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 553 DGPLSAAITAFTFEYI--SSGVSPVTTAVKYSANSCSIL 443
           +G   A +T F F  I  S G+S  TT ++YS  S  I+
Sbjct: 97  EGVKKAGLTGFQFNTIGVSDGISMGTTGMRYSLQSREII 135


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 400 LLFISIIDSTLFGLINMAIGNSCATCNLLIALPLTSKMQCLPFSATSRT 254
           +LF+ I    L  ++N A+   C+TC +   L L     C+PF    RT
Sbjct: 177 ILFVYIKSGDL--ILNKAL--ICSTCTISAVLLLIVSSVCIPFWTFERT 221


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -2

Query: 484 TTAVKYSANSCSILRARS*VFFACSSVILLFISIIDSTLFGLINMAIGNSCATCNLLIAL 305
           T AVK +A      R +  V      V++ F+ +     FG +N+     C+TC++  AL
Sbjct: 135 TKAVKVTAVGLYNSRKKWVVIIWLLWVVICFV-LFGCIKFGNLNLDKALICSTCSISAAL 193

Query: 304 PLTSKMQCLPF 272
            L      LPF
Sbjct: 194 LLFLLYVRLPF 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,527
Number of Sequences: 5004
Number of extensions: 40619
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)