Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M13
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702... 97 1e-20
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 31 0.86
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 29 3.5
12_02_0122 + 13923510-13925081 29 4.6
11_06_0077 - 19843056-19844984 29 4.6
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 29 6.1
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 29 6.1
03_02_0825 + 11565701-11565862,11565963-11566154,11567674-115677... 29 6.1
02_05_0885 - 32488750-32489145,32489372-32490040,32490245-324903... 29 6.1
>12_02_0529 -
20067974-20068588,20069982-20070048,20070156-20070264,
20070357-20070402,20070501-20070636,20070745-20070866,
20070944-20071306,20071914-20072043,20072129-20072202,
20072620-20072709,20072836-20072875,20073047-20073117,
20074248-20074277
Length = 630
Score = 97.5 bits (232), Expect = 1e-20
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Frame = +3
Query: 60 LISEFPDKFGSCVPHTTRPRRDYEVDGRDYHLVASREQMERDIQNHLFIEAGQYNDNLYG 239
L+ E+P KFG V HTTR R+ E+DG YH R ++E +I F+E + N+YG
Sbjct: 194 LMKEYPSKFGFSVSHTTRAPREKEIDGVHYHFT-ERSKIEEEISEGKFLEFAHVHGNVYG 252
Query: 240 TSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPIAIFIKPKSVESI---MEMNKRMTE 410
TSV +V V ++GK CILD+ + ++ + L I IF+ P S E + + TE
Sbjct: 253 TSVEAVESVTDEGKRCILDIDVQGARSVRASSLEAIFIFVCPPSFEELEKRLRARGTETE 312
Query: 411 EQAKKTYERA-LKMEQEFAE-YFTAVVTGDTPEEIYSKVKAVIA 536
EQ +K A +++Q + F ++ D E Y +K +++
Sbjct: 313 EQIQKRLRNARAELDQSNSPGLFDHLLVNDDLEACYENLKKLLS 356
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 31.5 bits (68), Expect = 0.86
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 54 DDLISEFPDKFGSCVPHTTR 113
DD++++FP+K GSC+ TTR
Sbjct: 507 DDMVAQFPNKAGSCIIVTTR 526
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/87 (20%), Positives = 45/87 (51%)
Frame = +3
Query: 201 FIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPIAIFIKPKSVES 380
F+ +YN +YG+ ++S R + GK + + +A++ + A P ++ + + +
Sbjct: 755 FLSREEYNQLVYGSVLSSTRRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITT 814
Query: 381 IMEMNKRMTEEQAKKTYERALKMEQEF 461
I+ +T+ + T E+ ++E+E+
Sbjct: 815 IL---NHVTKGRPPFTVEKKGRIEKEY 838
>12_02_0122 + 13923510-13925081
Length = 523
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 359 QTKECRVYNGNEQENDRRTSEEN 427
+TKE NG ++ D+RTSEEN
Sbjct: 495 KTKEQATTNGEDEGKDKRTSEEN 517
>11_06_0077 - 19843056-19844984
Length = 642
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 364 GLINMAIGNSCATCNLLIALPLTSKMQCLPFSATSRTDATDVPYRLSLYWPA 209
GL++ I N C +L + + ++C+ A R +A DV RL + W A
Sbjct: 249 GLLDTEIANEC-NMKILEGIGKLA-VECVAIDANKRPNANDVEKRLLMLWAA 298
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 177 ERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKH 284
E+ I+NH E+GQ Y + V E+ E+GKH
Sbjct: 191 EKIIRNHKLRESGQGQHQTYALGIKEVWEI-EEGKH 225
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 90 SCVPHTTRPRRDYEVDGRDYHLVASREQMER-DIQNHLFIEAGQYNDNLYGTSVASVREV 266
+C+P T R +V+G + A+ E+++R + EAG+ + + T ++S+ +
Sbjct: 464 ACMPTTKRVMYTLKVEGLMMDVTAAEEEIKRWKMAAEEEAEAGKAIEQEFETQLSSLNKE 523
Query: 267 AEKGKHCILDVSGNAIK 317
++ K +L++ N +K
Sbjct: 524 LDEAKQAMLELE-NKLK 539
>03_02_0825 +
11565701-11565862,11565963-11566154,11567674-11567718,
11568224-11568535,11569036-11569092
Length = 255
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 96 VPHTTRPRRDYEVDGRDYHLVASRE 170
V T+R +R EVDG+DY+ V E
Sbjct: 67 VTATSRAKRPGEVDGKDYYFVTKEE 91
>02_05_0885 -
32488750-32489145,32489372-32490040,32490245-32490301,
32490814-32491152
Length = 486
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 277 PFSATSRTDATDVPYRLSLY 218
P S T RT A+D+PYR+ Y
Sbjct: 423 PISVTDRTKASDLPYRVCRY 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,802
Number of Sequences: 37544
Number of extensions: 287612
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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