Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M13
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.66 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   2.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 313 IALPLTSKMQCLPFSATSRTDATDVPYRLSLYWPASMNR*FCMS 182
           + L +T+ +     S  SRTD   V Y  +L W   M+  +C++
Sbjct: 277 VGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCIA 320


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = +3

Query: 102 HTTRPRRDY-----EVDGRDYHLVASRE 170
           H  RP  DY     E DG DY +V SRE
Sbjct: 16  HFARPGGDYSLDEIEWDGGDYEVVESRE 43



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 99  PHTTRPRRDYEVDGRDYHLVASREQMERDIQNHLFIE 209
           P T  P R      R   L A REQM   ++    +E
Sbjct: 78  PETHHPIRHGRRQSRSMDLNAHREQMSWPVKKEAVVE 114


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 390 MNKRMTEEQAKKTYERALKM 449
           M+K+MT E+AKKT +   K+
Sbjct: 23  MSKKMTIEEAKKTIKNLRKV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,255
Number of Sequences: 438
Number of extensions: 2986
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)