Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M13
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ...   102   3e-22
At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to ...    89   4e-18
At3g06200.1 68416.m00713 guanylate kinase, putative similar to g...    42   5e-04
At1g26798.1 68414.m03264 Expressed protein                             34   0.14 
At1g26797.1 68414.m03263 self-incompatibility protein-related si...    32   0.41 
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...    29   3.8  
At3g04610.1 68416.m00493 KH domain-containing protein similar pu...    29   3.8  
At3g14075.1 68416.m01778 lipase class 3 family protein low simil...    28   8.9  
At1g54060.1 68414.m06160 expressed protein similar to 6b-interac...    28   8.9  

>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
           guanylate kinase (GK-1) [Arabidopsis thaliana]
           gi|7861795|gb|AAF70408
          Length = 387

 Score =  102 bits (244), Expect = 3e-22
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
 Frame = +3

Query: 60  LISEFPDKFGSCVPHTTRPRRDYEVDGRDYHLVASREQMERDIQNHLFIEAGQYNDNLYG 239
           L+ EFP  FG  V HTTR  R  E+DG  YH  A ++ ME++I++  F+E    + NLYG
Sbjct: 157 LMKEFPSMFGFSVSHTTRSPRSMEMDGVHYHF-ADKKVMEKEIKDGKFLEFASVHGNLYG 215

Query: 240 TSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPIAIFIKPKSVESIMEMNKRMTEEQA 419
           TS+ SV  V + GK CILD+     + ++ + L  I IF+ P S++ + +  +    E  
Sbjct: 216 TSIESVEAVTDSGKRCILDIDVQGARSVRASSLDAIFIFVCPPSMKELEDRLRARGTETE 275

Query: 420 KKTYERALKMEQEFAE-----YFTAVVTGDTPEEIYSKVKAVI 533
           ++  +R    E E  E      F  ++  D  EE Y K+K ++
Sbjct: 276 EQIQKRLRNAEAEIKEGISSGIFGLILYNDNLEECYKKLKNLL 318


>At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to
           guanylate kinase (GK-2) [Arabidopsis thaliana]
           gi|7861798|gb|AAF70409
          Length = 389

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
 Frame = +3

Query: 60  LISEFPDKFGSCVPHTTRPRRDYEVDGRDYHLVASREQMERDIQNHLFIEAGQYNDNLYG 239
           L+ EFP  FG  V HTTR  R  E +G  YH    +  ME++I++  F+E    + NLYG
Sbjct: 157 LMKEFPSMFGFSVSHTTRAPRCMEKNGVHYHFT-DKTVMEKEIKDGKFLEFASVHGNLYG 215

Query: 240 TSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPIAIFIKP---KSVESIMEMNKRMTE 410
           TS+ SV  V + GK CILD+     + ++ + L  I IF+ P   K +E  +      TE
Sbjct: 216 TSIESVEVVTDSGKRCILDIDVQGARSVKASSLDAIFIFVCPPSMKELEDRLRARGTETE 275

Query: 411 EQAKKTYERA---LKMEQEFAEYFTAVVTGDTPEEIYSKVKAVI 533
           EQ +K    A   +K  +  +  F   +  D  EE Y  +K ++
Sbjct: 276 EQIQKRLRNADAEIKAGKS-SGIFEHKLYNDNLEECYKTLKNLL 318


>At3g06200.1 68416.m00713 guanylate kinase, putative similar to
           guanylate kinase (GMP kinase) [Bacillus halodurans]
           Swiss-Prot:Q9K9Y2; contains Pfam profile: PF00625
           guanylate kinase
          Length = 282

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
 Frame = +3

Query: 96  VPHTTRPRRDYEVDGRDYHLVASREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEK 275
           V  T+RP R  EVDG+DY  V SR+Q    ++N   +E         G     ++E   K
Sbjct: 119 VTATSRPMRPGEVDGKDYFFV-SRDQFLSMVENEELLEYALVYGEYKGIPKKQIQEFMAK 177

Query: 276 GKHCIL--DVSGNAIKRLQVAQLFPIAIFIKPKSVESIME-MNKRMTEEQAKKTYERALK 446
           G+  +L  D+ G    R ++     + IF+  +S  +++E +  R TE Q +     A  
Sbjct: 178 GEDIVLRVDIQGAQTLR-RILGNSAVFIFLVAESELAMVERLIDRKTESQEELLVRVATA 236

Query: 447 MEQ 455
            E+
Sbjct: 237 REE 239


>At1g26798.1 68414.m03264 Expressed protein
          Length = 151

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 154 SWPAASRWSATYRITCSSRPASTTTICTERPWHPCEKSPRRA 279
           SWP  ++    +R+       ST  IC E  W+ CE  P RA
Sbjct: 96  SWPGNAKTFDIFRVDRDDNSKSTCGICRECIWYICETGPCRA 137


>At1g26797.1 68414.m03263 self-incompatibility protein-related
           similar to S3 self-incompatibility protein [Papaver
           rhoeas] GI:1107841
          Length = 140

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 154 SWPAASRWSATYRITCSSRPASTTTICTERPWHPCEKSPRRA 279
           SWP   +    +R        ST+ IC E  W+ CE  P RA
Sbjct: 85  SWPGNEKTFDIFRADRDDSSKSTSGICRECIWYICETGPCRA 126


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 444 KMEQEFAEYFTAVVTGDTPEEIYSKVKAVIAAXSGP 551
           K++  F+ Y    V  ++ EE+Y KV A I A   P
Sbjct: 217 KLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNP 252


>At3g04610.1 68416.m00493 KH domain-containing protein similar
           putative nucleic acid binding protein GB:CAB39665
           [Arabidopsis thaliana]; Pfam HMM hit: KH domain family
           of RNA binding proteins
          Length = 577

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 96  VPHTTRPRRDYEVDGR-DYHLVASREQMERDIQNH 197
           VP  T   + YEVD + +YH    ++Q   D+Q+H
Sbjct: 70  VPDQTLEPQQYEVDDQLEYHQYQLQDQANEDVQDH 104


>At3g14075.1 68416.m01778 lipase class 3 family protein low
           similarity to calmodulin-binding heat-shock protein
           CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
           profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
           region
          Length = 642

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 294 DVSGNAIKRLQVAQLFP---IAIFIKPKSVESIMEMNKRMTEEQAKKTYERALK 446
           D  G+A++R +  +      + IF+ P+S+ S + +++RM  +     Y R ++
Sbjct: 577 DEDGSALERPETVETVEEGRVGIFLTPRSLYSKVRLSQRMISDHFMPVYRRQIE 630


>At1g54060.1 68414.m06160 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 383

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 DTPEEIYSKVKAVIAAXSGPSVWV 563
           DT ++ Y + KA IA+  GPS WV
Sbjct: 150 DTVKKKYKQEKAKIASGDGPSKWV 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,026
Number of Sequences: 28952
Number of extensions: 220022
Number of successful extensions: 726
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)