Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M12
         (858 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3DI17 Cluster: Putative uncharacterized protein; n=1; ...    38   0.25 
UniRef50_Q4RFC7 Cluster: Chromosome 8 SCAF15119, whole genome sh...    34   4.0  
UniRef50_A7CNU0 Cluster: NapC/NirT cytochrome c domain protein p...    33   7.0  

>UniRef50_A3DI17 Cluster: Putative uncharacterized protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep: Putative
           uncharacterized protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 279

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 551 WESTGTVCRQNVYLLTIVIFVHVFIDSVNLYHFKSLNDFVASNRNVL*NNAV 706
           +E T     QNVYLL I IF+ +F+  +     K++++F   N+N L NN +
Sbjct: 196 FEKTAITSSQNVYLLRINIFISLFVTIILTLAVKNIHEFY-KNKNTLNNNEI 246


>UniRef50_Q4RFC7 Cluster: Chromosome 8 SCAF15119, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 8
           SCAF15119, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 110

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -1

Query: 582 FCLHTVPVDSHVAVTGPVCGQ-HICAS--TPLRWTIILTKPHRLRSAQS 445
           FC    PV  H   TG +CG    C S     RW+ I+  PH L  + S
Sbjct: 31  FCQREKPVSEHFTTTGRICGTVSSCFSIREETRWSNIINSPHALDQSPS 79


>UniRef50_A7CNU0 Cluster: NapC/NirT cytochrome c domain protein
           precursor; n=1; Opitutaceae bacterium TAV2|Rep:
           NapC/NirT cytochrome c domain protein precursor -
           Opitutaceae bacterium TAV2
          Length = 207

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 625 NKHVNENDNSKQINVLS-THGPGRFPRSCHRPSMRAAYLRIYTTPLDNHPNKASPTP 458
           + H+NE   +    + S  HG GRF   CHR         +  TP    P  ASP P
Sbjct: 122 HNHLNEKVTTTGTTLASRAHGDGRFCWDCHREVPHGTRNSLSATPNARVPYPASPVP 178


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,228,592
Number of Sequences: 1657284
Number of extensions: 14266737
Number of successful extensions: 34956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34946
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)