Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M12
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   4.5  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    26   6.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   7.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   7.9  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   7.9  

>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 543 VTGPVCGQHICASTPLRWTIILTKP 469
           V GP+ G  IC  T  RW   +  P
Sbjct: 234 VAGPIIGGAICQRTTWRWIFFINLP 258


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   TGNILHILSVIKTINLFDWWSS 67
           T N   +LSV+ TI LF++WS+
Sbjct: 72  TTNDSSLLSVVPTIVLFEYWSN 93


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 614  HVFIDSVNLYHFKSLNDFVASNRNV 688
            HVF+DS    HFK  ++   S  N+
Sbjct: 2878 HVFLDSYRALHFKDADEVKFSKLNI 2902


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 581 NVYLLTIVIFVHVFIDSVNLYHFKSLNDFVASNRNVL 691
           N Y+LT  + V+ +    N +HF  L  F+++NR  L
Sbjct: 2   NSYVLTSQVLVYNYSKRKNYWHF-WLRSFMSNNRKFL 37


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 673 SYEIVKALKVIQIDA-INKHVNENDNSKQINVLSTHGPGRFPRSCHRPSMRAAYLRI 506
           SY +    K + ID  I  H N N+   +  +  ++  G+F + C+   +  AY R+
Sbjct: 186 SYVVFDVAKPVPIDVNIYDHGNNNEFVGRTYIHPSYNYGQFEQFCNSVEVSPAYNRM 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,005
Number of Sequences: 5004
Number of extensions: 62666
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)