Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M12
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8) 31 1.2
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05) 31 1.6
SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_57205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_7612| Best HMM Match : Protamine_3 (HMM E-Value=1.2) 29 6.4
SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34) 29 6.4
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 29 6.4
SB_29147| Best HMM Match : TAFH (HMM E-Value=4.1) 28 8.5
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 28 8.5
SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)
Length = 996
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 691 KNVSI*SYEIVKALKVIQIDAINKHVNENDNSKQINVLSTHGPGRFPRSCHRP-SMRAAY 515
+N++ S E V+ K D I +H N++D ++ + + TH G P C P RA Y
Sbjct: 419 RNITFLSEEEVEKRKD---DRIPEHENQHDTTQSCHNIRTHHSGA-PMPCEAPRDWRAPY 474
Query: 514 LR--IYTT 497
LR +Y T
Sbjct: 475 LRKGVYKT 482
>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
Length = 651
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 667 EIVKALKVIQIDAINKHVNENDNSKQINVLSTHGP 563
+I++ + +IDA+ H N + NS++I ++T+ P
Sbjct: 435 QILRVANISRIDALRPHNNNHKNSRRIPFVTTYNP 469
>SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 222 TYRSCFCVAICTPIRRHRCLFATSFCFRYISGS*RYIFTNNGRARVLNSVRD 377
T R+C V+IC ++ L A + F + +G TN+G NS+ D
Sbjct: 103 TMRNCGIVSICYHLKEFSSLLAAALRFGHATGKRCVTKTNSGCEETRNSLAD 154
>SB_57205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = -3
Query: 667 EIVKALKVIQIDAINKHVNENDNSKQINVLSTHGP 563
+I++A + +IDA+ + N + NS++I ++T+ P
Sbjct: 2 QILRAANISRIDALRPNNNNHKNSRRIPFVTTYNP 36
>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = -3
Query: 667 EIVKALKVIQIDAINKHVNENDNSKQINVLSTHGP 563
+I++ + +IDA+ + N + NS++I+ ++T+ P
Sbjct: 196 QILRVANISRIDALRPNNNNHKNSRRISFVTTYNP 230
>SB_7612| Best HMM Match : Protamine_3 (HMM E-Value=1.2)
Length = 266
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 570 TVPVDSHVAVTGPVCGQHICASTPLRWTIILTKPHR 463
T + S V +TGPVC + + L +I +PH+
Sbjct: 21 TTSLHSKVVLTGPVCSRKFDSDVSLLKEVIAEEPHK 56
>SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34)
Length = 211
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 690 FKTMQSHCHLLYANEXRL*HSLLGITXTVRSCXVRGLXTAL 812
+ ++SH + AN+ L LLG+ T +SC + G+ L
Sbjct: 34 YDIIKSHSEDISANKKSLNFILLGVAGTGKSCLINGIRALL 74
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -3
Query: 673 SYEIVKALKVIQIDAINKHVNENDNSKQINVLSTHGP 563
S +I++ + +IDA+ + N + NS++I ++T+ P
Sbjct: 545 SRQILRVANISRIDALRPNNNNHKNSRRIPFVTTYNP 581
>SB_29147| Best HMM Match : TAFH (HMM E-Value=4.1)
Length = 249
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -3
Query: 667 EIVKALKVIQIDAINKHVNENDNSKQINVLSTHGP 563
+I++ + +IDA+ + N + NS++I ++T+ P
Sbjct: 126 QILRVANISRIDALRSNNNNHKNSRRIPFVTTYNP 160
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 577 STHGPGRFPRSCHRPSMRAAYLRIYTTPLDNHPNKASPTPLGP 449
S+H P + S H+P+ L + T L + P +PTP+ P
Sbjct: 222 SSHQPSCYQPSSHQPNSHQPQLLL--TQLPSTPAPINPTPINP 262
>SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -3
Query: 667 EIVKALKVIQIDAINKHVNENDNSKQINVLSTHGPGR 557
+I++ +IDA+ + N + NS++I ++T+ P R
Sbjct: 73 QILRVANTSRIDALRPYNNNHKNSRRIPFVTTYNPTR 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,124,664
Number of Sequences: 59808
Number of extensions: 482472
Number of successful extensions: 1150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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