Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M12
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   1.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   1.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.3  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = -3

Query: 625 NKHVNENDNSKQINVLSTHGPGRFPRSCHRPSMRAAYLRIYTTPLDNHPNKASPTPLGPI 446
           NK ++ N+N K       +    +  +C +      Y+     P+  +     P P+GP 
Sbjct: 87  NKTIHNNNNYKY-----NYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPW 141

Query: 445 ISHAVTVERDR 413
           IS    + R R
Sbjct: 142 ISMQEQIPRFR 152


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = -3

Query: 625 NKHVNENDNSKQINVLSTHGPGRFPRSCHRPSMRAAYLRIYTTPLDNHPNKASPTPLGPI 446
           NK ++ N+N K       +    +  +C +      Y+     P+  +     P P+GP 
Sbjct: 87  NKTIHNNNNYKY-----NYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPW 141

Query: 445 ISHAVTVERDR 413
           IS    + R R
Sbjct: 142 ISMQEQIPRFR 152


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = -3

Query: 625 NKHVNENDNSKQINVLSTHGPGRFPRSCHRPSMRAAYLRIYTTPLDNHPNKASPTPLGPI 446
           NK ++ N+N K       +    +  +C +      Y+     P+  +     P P+GP 
Sbjct: 87  NKTIHNNNNYKY-----NYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPW 141

Query: 445 ISHAVTVERDR 413
           IS    + R R
Sbjct: 142 ISMQEQIPRFR 152


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 586 NVLSTHGPGRFPRSCHRPSMRAAYLRIYTTPLDNHPNKASP 464
           NV ST GP       H  +M   +  I+ TP  +H + A+P
Sbjct: 407 NVYSTPGP-------HHHTMGHGHSHIHATPHHHHSHAATP 440


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 339 NNGRARVLNSVRDFXFRVHKFKLASRSRSTVTAWE 443
           N+G     +S RD    +    + S S +TV  WE
Sbjct: 541 NSGNGNTNSSARDSSPAIESISVDSGSINTVAEWE 575


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 485 IVQRSGVDAQICCPHTG 535
           IVQ  G DA++ C  TG
Sbjct: 282 IVQTKGSDAELICVTTG 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,990
Number of Sequences: 438
Number of extensions: 5171
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)