Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M12
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14200.1 68417.m02191 expressed protein                             31   0.98 
At4g39745.1 68417.m05627 hydroxyproline-rich glycoprotein family...    29   4.0  
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    29   4.0  
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    28   6.9  
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    28   9.1  

>At4g14200.1 68417.m02191 expressed protein
          Length = 784

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
 Frame = -3

Query: 664 IVKALKVIQIDAINKHVNENDNSKQINVLSTHGPGR-FPRSCHRPSMRAAYLR-IYTTPL 491
           +V  L VIQ + ++ +V  ++N  ++ V       R F R     ++  A++R + ++PL
Sbjct: 589 VVGGLGVIQANEVDGNVKAHNNYAEVPVTIESNDHRDFGRL---QNLSEAHIRSLVSSPL 645

Query: 490 --DNHPNKASPTPLGPIISHAVTVERDRDASLN 398
              N+ + AS + LGP+   +  V +  DAS N
Sbjct: 646 VTRNNTSNASESNLGPVSGLSAGVNKQEDASQN 678


>At4g39745.1 68417.m05627 hydroxyproline-rich glycoprotein family
           protein 
          Length = 253

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = -3

Query: 616 VNENDNSKQINVLSTHGPG----RFPRSCHRPSMRAAYLRIYTTPLDNHPNKASPTPLGP 449
           +N+N+N    +  + H P     +FP S  + S    +LR  +  L  H + +SP P  P
Sbjct: 17  INDNENKTGNDPSTWHRPTSSLPQFPSSASQVSSPPQHLRNRSLNLSPHVSPSSPPPPDP 76

Query: 448 ---IISHAVTVERDR 413
              I ++ V V RD+
Sbjct: 77  IPEIETYVVHVPRDQ 91


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1092

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 533 GPVTATWESTGTVCRQNVYLLTIVIFVHVFIDSVNLYH 646
           GPV    E+  TV   N+  L +VIFV   +  + LYH
Sbjct: 329 GPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILYH 366


>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 220 SFNNTRKHCLNNXL*KYSVMLNGESGLRTDAKTVTHTVRDDVKISHSGTF 71
           +F +   H LNN     +   +GESGL+ D   VT  V D+   S S +F
Sbjct: 18  TFAHVNGHHLNNNASDLNSH-SGESGLKDDPSPVTENVDDNKHTSESFSF 66


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 347 PVVSEDVTLR--AGDVTKTKRCRKETTVPSNRRTDRDTK 237
           PV+ ED T R  AGD        K+T+VP     D DTK
Sbjct: 314 PVMPEDGTTRLTAGDEASPSGTVKDTSVPEPIWDDEDTK 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,340,696
Number of Sequences: 28952
Number of extensions: 314657
Number of successful extensions: 779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)