Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M11
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    33   0.039
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.9  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   7.8  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 613 TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALR-RARPTRYGLMIPN 452
           ++NP  R +SR+       PP+SAP++  S +   P  A + R R  R+G+   N
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGVAAKN 245


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 691 IFKNNEK*RPLSERESGSYSGTRQRNRFNNRPSSLKRVSTGYPKWPENP 837
           +  N++  +   + E  S   T    +  N PSS   VS  YPK P +P
Sbjct: 650 VISNDDSTQVEEDSEDKSTPNTGASAKLINDPSSTITVSDVYPKKPASP 698


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 643 DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRA 485
           D L R Q    RNP PR+  R S   L  P  S  + + + L  +P  +L +A
Sbjct: 118 DLLLRHQQKIHRNPQPRR-RRRSTTALPNPSLSNVSVSTTNLASKPVISLPQA 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,656,080
Number of Sequences: 5004
Number of extensions: 77851
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)