Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M11
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 32 0.55
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 30 2.2
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 3.0
At1g74690.1 68414.m08650 calmodulin-binding family protein low s... 29 3.0
At4g31020.2 68417.m04406 expressed protein 29 3.9
At4g31020.1 68417.m04405 expressed protein 29 3.9
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 29 5.2
At1g48960.1 68414.m05487 universal stress protein (USP) family p... 28 6.8
At4g02900.1 68417.m00392 early-responsive to dehydration protein... 28 9.0
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat... 28 9.0
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 9.0
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 9.0
At2g23340.1 68415.m02787 AP2 domain-containing transcription fac... 28 9.0
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 28 9.0
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 422 VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 514
VTG+ D+ L+W H A TSRT +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 19 RSFPQDSWRRYKILKQSHPVKRMIRGIGAGTTSTYSQTLNG*ELRLTRT 165
R +PQ+ R + + ++SH V + +GT +++ +G L+ RT
Sbjct: 83 RGYPQEMDRWFAVQEESHRVGHSVTASASGTNMSWASFESGRSLKTART 131
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 676 PHRHKISP*A*DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRP 506
P K SP D + + F R+P P Q + + P S PT P TP P
Sbjct: 409 PQPPKESPQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPPTSPPVHSTPSP 465
>At1g74690.1 68414.m08650 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 587
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 199 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 104
P +V + PAS+FE + V T +FE RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313
>At4g31020.2 68417.m04406 expressed protein
Length = 294
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -3
Query: 789 RGTIIETVPLPGSGIGTGFPFAQRALFFIIFKNYKKTRHIDIRSLL 652
RG ++ + L SGI +P + L+F IFKN K RH++ + L+
Sbjct: 164 RGVVLHSAIL--SGIRVLYP-VKMTLWFDIFKNIDKIRHVNSQVLV 206
>At4g31020.1 68417.m04405 expressed protein
Length = 294
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -3
Query: 789 RGTIIETVPLPGSGIGTGFPFAQRALFFIIFKNYKKTRHIDIRSLL 652
RG ++ + L SGI +P + L+F IFKN K RH++ + L+
Sbjct: 164 RGVVLHSAIL--SGIRVLYP-VKMTLWFDIFKNIDKIRHVNSQVLV 206
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 262 LGALTLRLVHPTAPVLLTKIGPLGTVIRSPASSFE*AGVLTHLKFEN 122
LG+ T R V+ + +LL + GTVIRS S+ GV H N
Sbjct: 881 LGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANERN 927
>At1g48960.1 68414.m05487 universal stress protein (USP) family
protein contains Pfam PF00582: universal stress protein
family; similar to hypothetical protein GI:7770340 from
[Arabidopsis thaliana]
Length = 219
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 586 SRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTR 473
S+ + L +P PT+ P L P P L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209
>At4g02900.1 68417.m00392 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 785
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 679 CFFIIFKNNEK*RPLSERESGSYSGTRQRNRFNNRPSSLKRVSTGY 816
C +++ N+ + +++R++ T N+F +PSS TGY
Sbjct: 232 CHQVVYNANDLAKLVAQRKAMQNWLTYYENKFERKPSSRPTTKTGY 277
>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 520
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 302 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 409
+T+ WP SESAK+ L + P ++ + C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 258 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 359
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 258 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 359
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g23340.1 68415.m02787 AP2 domain-containing transcription
factor, putative
Length = 176
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 489 RRRAQKGLGVSPLGASVGADLGGSSKYSSEALED*RGEG 605
R+ A+ G V LGA+V + GG ++ E +E+ R G
Sbjct: 109 RKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSG 147
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 598 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 455
P + AS L PP ++P+ P+G TP +L P+ IP
Sbjct: 109 PAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIP 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,681,031
Number of Sequences: 28952
Number of extensions: 441702
Number of successful extensions: 1129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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