Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M09
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    38   0.002
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   1.1  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   3.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.9  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = -1

Query: 431 YFKFTIEIVCILFFIVGELLSMVIMFFFFNL*SVTDHWRFSSVILFFSSRI 279
           Y+K+TI+ + I++F   ++L+++I   FF       HW  SSV LF +S +
Sbjct: 399 YYKYTIDGIYIIYF---DMLALIIPTIFFGFFGSQGHWFTSSVFLFTASLV 446


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 402  ANNFNSEFKINHXTVSNGVISESRDLRRSQVVASNFYLNT 521
            A +FNS+F+I    +S+G++    +L   + + +  Y  T
Sbjct: 1661 AESFNSDFEIRAKILSSGIVEHMPNLLSQEALCAKLYFYT 1700


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 308 SVILFFSSRIPNLLRGHCARGGGGL 234
           S +L+F +RIP +++ H A+   GL
Sbjct: 185 SSVLYFCARIPQIIKNHKAKSTEGL 209


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 564 YSKMKHMSLQI--RTIQYLNRSSKPLLEISEDH 472
           + ++KH+  +I  R I  +NRS+  LLE  + H
Sbjct: 418 FGRLKHVDTEIVARCISVMNRSNPTLLEFMQYH 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,370
Number of Sequences: 5004
Number of extensions: 57874
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)