BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_M09 (848 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 38 0.002 SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 29 1.1 SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 27 3.4 SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 5.9 >SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1|||Manual Length = 881 Score = 37.9 bits (84), Expect = 0.002 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = -1 Query: 431 YFKFTIEIVCILFFIVGELLSMVIMFFFFNL*SVTDHWRFSSVILFFSSRI 279 Y+K+TI+ + I++F ++L+++I FF HW SSV LF +S + Sbjct: 399 YYKYTIDGIYIIYF---DMLALIIPTIFFGFFGSQGHWFTSSVFLFTASLV 446 >SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1811 Score = 28.7 bits (61), Expect = 1.1 Identities = 11/40 (27%), Positives = 22/40 (55%) Frame = +3 Query: 402 ANNFNSEFKINHXTVSNGVISESRDLRRSQVVASNFYLNT 521 A +FNS+F+I +S+G++ +L + + + Y T Sbjct: 1661 AESFNSDFEIRAKILSSGIVEHMPNLLSQEALCAKLYFYT 1700 >SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 271 Score = 27.1 bits (57), Expect = 3.4 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -1 Query: 308 SVILFFSSRIPNLLRGHCARGGGGL 234 S +L+F +RIP +++ H A+ GL Sbjct: 185 SSVLYFCARIPQIIKNHKAKSTEGL 209 >SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1842 Score = 26.2 bits (55), Expect = 5.9 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -3 Query: 564 YSKMKHMSLQI--RTIQYLNRSSKPLLEISEDH 472 + ++KH+ +I R I +NRS+ LLE + H Sbjct: 418 FGRLKHVDTEIVARCISVMNRSNPTLLEFMQYH 450 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,989,370 Number of Sequences: 5004 Number of extensions: 57874 Number of successful extensions: 114 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 113 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 420459900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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