Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M09
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06)          33   0.29 
SB_58783| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    29   6.3  
SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_50409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06)
          Length = 183

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 148 PALSHPTSDLRPGSEPGQSRGVPAVNTITRLGVPGIPCWVKNQPAESKR 2
           P L+H  + L   S P  SRG P    +  +G P +P  + N+P   +R
Sbjct: 99  PGLAHAMNGLSSLSIPSTSRGGPVPAFVPFIGKPVVPAALMNRPTRGER 147


>SB_58783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 163 TKMTXPALSHPTSDLRPGSEPGQSRGVPAVNTITRLGVPGIPCWVKNQPAESKR 2
           T++   A+ +P S L   S P  SRG P    +  +G P +P  + N+P   +R
Sbjct: 43  TRLLRKAVKNPKSSL---SIPSTSRGGPVPAFVPFIGKPVVPAALMNRPTRGER 93


>SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -2

Query: 181 FLGPYRTKMTXPALSH---PTSDLRPGSEPGQSRGVPAVNTITRLGVPGIPCWVKNQPAE 11
           FLGP       P  +H   P  D    SE    + + A+N     G  GIP WV N+ A+
Sbjct: 579 FLGPMGVFSPLPPCAHAHFPPDDALQVSELSVLQKLSALNPRKASGPDGIPGWVLNECAD 638


>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 618 KDIVIKQLQTYAKFHKQDYSKMKHMSLQI-RTIQYLNRSSKPLLEISEDH 472
           +DI +  +   AK   Q    +K M  +  R ++ L ++ KPL E+ E H
Sbjct: 557 EDIEVALIDEVAKLKNQQQDALKEMEKKNKRKLRELQKAQKPLQELLEQH 606


>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 657 HVSIRHK*SLGS*KDIVIKQLQTYAKFHKQDYSKMKHMSLQ 535
           HV ++ K  L +  DI  +  +T A+    D+SK+KH+  +
Sbjct: 693 HVEVQEKNPLPTKDDITTESTETRAEVKTFDHSKLKHVQTE 733


>SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 157 MTXPALSHPTSDLRPGSEPGQSRGVPAVNTITRL--GVPGIPCWVKNQPAES 8
           +T    S    DLRP   P  S   PAV  ITR+  G+  +P W    P  S
Sbjct: 207 VTLTGASPTFGDLRPNWAPPSSITRPAVAPITRVRPGLDCLPVWSTTLPITS 258


>SB_50409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 332 VTDHWRFSSVILFFSSRIPNLLRGHCARGGGG---LVGLDNLQIFGADCGPKVL 180
           +T+++R  S++     R P LLRG   + GGG   +V +D  + F   C  ++L
Sbjct: 201 LTENYRPISLVSKVLERSPRLLRGSVGQWGGGQIDMVYMDMSKAFDKVCHTRLL 254


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -2

Query: 181  FLGPYRTKMTXPALSHP---TSDLRPGSEPGQSRGVPAVNTITRLGVPGIPCWVKNQPAE 11
            FL P R     P  +H      D    SE    + + A+N     G+ GIP WV N+ A+
Sbjct: 872  FLEPMRVFSPLPPSAHAHISPDDALQVSELSVLQKLSALNPRKAFGLDGIPSWVLNECAD 931


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,366,287
Number of Sequences: 59808
Number of extensions: 438859
Number of successful extensions: 915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)