Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M09
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61952-5|AAB03162.1|  135|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   5.5  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   5.5  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   5.5  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   5.5  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    28   7.3  

>U61952-5|AAB03162.1|  135|Caenorhabditis elegans Hypothetical
           protein F42A9.3 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 491 LRSPKITRFANH-TIRNSXMIYFKFTIEIVCILFFIVGELLSMVIMFFFFNL*SVTDHWR 315
           +++PKI   A   T R+S  +  K   + +C L  +VG +L   I FFFF + S+ D   
Sbjct: 53  VKAPKIVADAQQGTNRSSETLENKMVHDFMCGLGGVVGAILFSGI-FFFFGVASMRDKVY 111

Query: 314 FSSV 303
           F  +
Sbjct: 112 FLEI 115


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 225  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 320
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 225  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 320
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 225  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 320
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 225  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 320
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
            F46H5.4 protein.
          Length = 2018

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 346  KKKNIITIDNSSPTMKNKMQTIS 414
            KK+ I+T++NS P +K ++Q ++
Sbjct: 1852 KKRTILTVENSFPYIKTRLQVVN 1874


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 606 IKQLQTYAKFHKQDYSKMKHMSLQIRTIQYLNRSSK 499
           ++ +  + K+HKQ+Y+ M  + L++   Q +  S K
Sbjct: 604 LRPIDPFTKYHKQNYNNMDLLELEVGQNQNVRSSQK 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,247
Number of Sequences: 27780
Number of extensions: 351922
Number of successful extensions: 760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)