Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M09
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       24   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   8.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.2  

>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -2

Query: 133 PTSDLRPGSEPGQSRGVPAVNTITRLGVPGIPCWVKNQ 20
           P  +    +E     G+ AV  +   G+P +  W+K +
Sbjct: 29  PEPEAEADAEADPEAGIGAVLKVLTTGLPALISWIKRK 66


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 624 CPRTTCV*WKRVNSLTFRFXWLFISAIGCMRSPXVXRXVTXSITTEFXSXXHXEXKS 794
           C R +    K + S + R+   F S+I   RSP   R  + S+ T      H + KS
Sbjct: 6   CDRKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKS 62


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 393 KQNANNFNSEFKINHXTVSNGVI 461
           +Q+ N+F  +  INH  V+ GVI
Sbjct: 886 EQSFNHFVLKMGINHGPVTAGVI 908


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 428 FKFTIEIVCILFFIVGELLSMVIMFFFFN 342
           F+F  ++ C+L  +V  L+ + +   FFN
Sbjct: 87  FRFYWDL-CMLLLLVANLIILPVAISFFN 114


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 428 FKFTIEIVCILFFIVGELLSMVIMFFFFN 342
           F+F  ++ C+L  +V  L+ + +   FFN
Sbjct: 87  FRFYWDL-CMLLLLVANLIILPVAISFFN 114


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 152 SHFSAVGP*KEPWARNRLQIS 214
           SH     P KE W R  LQIS
Sbjct: 176 SHALLKDPVKEFWERRTLQIS 196


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 152 SHFSAVGP*KEPWARNRLQIS 214
           SH     P KE W R  LQIS
Sbjct: 229 SHALLKDPVKEFWERRTLQIS 249


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 428 FKFTIEIVCILFFIVGELLSMVIMFFFFN 342
           F+F  ++ C+L  +V  L+ + +   FFN
Sbjct: 87  FRFYWDL-CMLLLLVANLIILPVAISFFN 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,833
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)