Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M09
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21630.1 68415.m02573 transport protein, putative similar to ...    31   0.97 
At2g37360.1 68415.m04582 ABC transporter family protein                29   3.0  
At4g18530.1 68417.m02746 expressed protein contains Pfam profile...    29   5.2  
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    29   5.2  

>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 237 SPSSPGAVTSQEIRDPARKKKDDT*KSPMICHR 335
           S   PGA+ S+E+ DP R  KD    S M  H+
Sbjct: 296 STQGPGAIVSRELSDPIRSHKDIDKDSAMYYHK 328


>At2g37360.1 68415.m04582 ABC transporter family protein 
          Length = 755

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 356 FFFFNL*SVTDHWRFSSVILFFSSRIPNLLRG 261
           FFFF    +   W  SS + F S  IPN++ G
Sbjct: 579 FFFFYFTILASFWAGSSFVTFLSGVIPNVMLG 610


>At4g18530.1 68417.m02746 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 349

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 479 KITRFANHTIRNSXMIYFKFTIEIVCILFFIVGELLSMVIMFF--FFNL*SVTDHWRFSS 306
           K     N  I+ S  IYF  T  +V ++  + G  L++  +FF  FF+    + ++R+ S
Sbjct: 107 KQKELVNKVIQKSTSIYFFGTKILVLVISILNGNTLNIEFVFFFIFFHFSFQSFYFRYLS 166

Query: 305 VI 300
           ++
Sbjct: 167 IV 168


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 419 TIEIVCILFFIVGELLSMVIMFFFFNL*SVTDHWRFSSVILFFSSRIPNLLRGH 258
           +I      F+ VG L   +  FF++ L      W  SS++ F S  IPN++  +
Sbjct: 512 SIAFAATTFWTVG-LSGGLESFFYYCLIIYAAFWSGSSIVTFISGLIPNVMMSY 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,797
Number of Sequences: 28952
Number of extensions: 301507
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)