Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M07
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    29   0.62 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   7.6  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    26   7.6  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 461 PHNEEQD*TVRRSCGNRRWECYTNGGALFNC 553
           P+ ++++  +  S G R W C TN G L+ C
Sbjct: 139 PYLDDKEFIIDISAGLRHWICVTNEGNLYGC 169


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 299 IPLMSLVTPKVLDLILLAQSGXRSSPRTESRISRDR-GSYIEKAGPR 436
           +PL  LVTP + + I+LA++         S    +R  + I K GP+
Sbjct: 162 LPLTYLVTPNIPEAIVLAKNQGLDISNINSVSDMERCAAVIHKLGPK 208


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 104 YQR*SLNMDDDDYWNTSDTKAKAFSFDDDVLSPQEILAIGQKTYPGQKE 250
           Y+   LN  DD   ++ D +    S +D  +S  E L+  +  YP +KE
Sbjct: 160 YEHTHLNSRDDSNPSSCDRETFFLSDEDSEISLMEGLSSIENGYPDEKE 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,305
Number of Sequences: 5004
Number of extensions: 51150
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)