Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M06
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.76 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    24   1.8  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   4.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 703 PSLTAEARVTNHHYSTPXRGSKPYVGM 783
           PS+     +  HHY  P  G +P  GM
Sbjct: 52  PSVGLRQGIPPHHYGGPPSGGQPPQGM 78


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 35  WRSAKSYENFKTFISDV 85
           W   +SY NF  F+ D+
Sbjct: 64  WNQFRSYSNFSVFLFDI 80


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 100 NLIHLYVTDKCFKIFIR 50
           NL+++Y  D  F +F+R
Sbjct: 156 NLVYVYCCDNNFNVFLR 172


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +3

Query: 519  CLVNELLQTEGLQCQQLYLKLILIQCRV*VICHGSTLAITTI----QFLVKVVTHQH 677
            C+V +L + + LQ   L     L    V  ICH     I  +    + + K+ T+ H
Sbjct: 895  CVVLQLQENDWLQLGYLIFVSTLYTANVVCICHVCYSTIQEVSKSGELIHKIATNDH 951


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,054
Number of Sequences: 336
Number of extensions: 3832
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)