Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M06
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)                  28   8.4  

>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 712 TAEARVTNHHYSTPXRGSKPYVGMVNSRHRKHXXYXFSENFRG 840
           T   R T +H STP RGS PY G +   +R    Y  S  +RG
Sbjct: 381 TPYRRSTPYHGSTPYRGSTPYRGSI--PYRGSTPYRGSTPYRG 421


>SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)
          Length = 272

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 122 FTRRQFYVPFILVFKILNAQKTSKLDSQQILFITSKRKYLSWQSI 256
           F   +F+  F+L  ++L A    ++  ++ + +   RKY SW +I
Sbjct: 227 FGNVKFFNRFLLKDRVLEAFPKVRISDRRTVIVIKGRKYRSWNAI 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,330,752
Number of Sequences: 59808
Number of extensions: 464193
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)