Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_M02
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.4
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.2
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 27 4.2
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 26 5.6
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 5.6
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 7.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 7.4
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 9.8
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 25 9.8
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +1
Query: 160 QFIAKEAGALFDSSLLEDT-PSSSTNGT----ETLVPE--DNLYALMPPFETFLNVDKTA 318
+F+ ++G++ + +D P SS++ +T+ P +N Y + P + + +
Sbjct: 64 KFLQGKSGSVKVQEIPQDQLPKSSSDNAVTDRKTISPSGINNQYVIRNPKDVYYATVQAG 123
Query: 319 RLRHFFDNVKTGELI 363
+L H FD VKT EL+
Sbjct: 124 KL-HLFDPVKTSELL 137
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 196 SSLLEDTPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAV 375
SSL +PS ST G E + +D Y L+ +E ++ A + H F + + A
Sbjct: 1603 SSLRNVSPSESTGGYEGCIFDDQQYQLL--YELCERLEDHAAILHGFPEPPPCDTGLAAP 1660
Query: 376 INR 384
+N+
Sbjct: 1661 VNQ 1663
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 91 FAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDS-SLLEDTPS 222
+ +YQ H HL + + R +H+F+ A AL +S LL D+ S
Sbjct: 321 YELYQ--HSHLGYGLKEARKLIHKFVLNNAEALKESLELLGDSTS 363
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 768 GXNAVGLLKPGSSPIWLHSFLL 703
G +A GL+ G +PI+L SFLL
Sbjct: 71 GSSASGLMITGLAPIYLSSFLL 92
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 416 CTAGPTSRYVADINVKAFLPVGNIIQAVDKKNVSRNY 526
C+ PTS+ A I +A + V N+ V+ KN++ +Y
Sbjct: 341 CSGLPTSKTYAAITAQAPVMVHNLWSFVNGKNLTASY 377
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 217 PSSSTNGTETLVP 255
P+ STNGTET +P
Sbjct: 547 PNGSTNGTETFIP 559
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 34 WESERGEDDLAKIGVGALDFAVYQSRHKHLT 126
W+SE EDD+ +GV ++ K +T
Sbjct: 63 WDSEENEDDITDVGVPGSHEIMFPGHSKIVT 93
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 443 VADINVKAFLPVGNIIQAVDKKNVSRNYLMNDTV 544
+AD NV+ F P+ I K+NV L+ ++
Sbjct: 62 IADENVRIFPPLHKTIDWAKKRNVEEQNLIEQSI 95
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 9.8
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -2
Query: 389 AVLLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAYKLSSGTRVSVPLVDDEGVS 210
A+++ + P I+S ++ K+ +NL L + G+N K G +S+ L+ +S
Sbjct: 120 AIIIGSNPKIASTLWIDPKRFINLPKLQSDSIFKILGLNVPKGWKGIHISLNLIKWNSLS 179
Query: 209 SSKEESNKAPASLAM 165
S +N S+ +
Sbjct: 180 SRGRITNIIKGSVPL 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,613
Number of Sequences: 5004
Number of extensions: 60823
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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