Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_M02
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    30   2.5  
11_01_0114 - 886404-887111                                             29   4.4  
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012     29   5.9  
03_06_0158 + 32052426-32052529,32052645-32052702,32052847-320529...    28   7.8  

>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = -2

Query: 293 VSNGGINAYKLSSGTRVSVPLVDDEGVSSSKEESNKAPASLAM 165
           ++ G +   + +SG+  S+  VDD GVSS+ EE  +A A+LA+
Sbjct: 114 INMGLLVGRRRNSGSEESI--VDDGGVSSNDEEHREAKAALAV 154


>11_01_0114 - 886404-887111
          Length = 235

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 214 TPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLR 327
           T +++ NG+ +++P   + A  PPF T  + D  +R R
Sbjct: 5   TAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRR 42


>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
          Length = 401

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 574 IWNNFYDFAANSVI-HQVVS*HIFLVNSLNNISYW 473
           +W NF DFA N ++ HQ+     F ++ +NN+  W
Sbjct: 80  VWQNFEDFADNLMLHHQIAHLDTFQLH-VNNVYRW 113


>03_06_0158 +
           32052426-32052529,32052645-32052702,32052847-32052983,
           32053824-32053899,32053965-32054017,32054415-32054896,
           32055097-32055184,32055482-32055665,32056443-32056640,
           32057351-32057534,32057982-32058109,32058236-32058317,
           32058444-32058496,32058625-32058700,32059253-32059314
          Length = 654

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 73  GVGALDFAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDSSLLEDTPSSSTNGTETLV 252
           GVG  D+ ++   + ++ FQ+ S  +  H   A +A  L DS  L +  +  T G +   
Sbjct: 593 GVGPWDYPIFSDLYPNVMFQEPSGLIYGHVVEADQA-FLPDSHELANADNQFTGGNDDSA 651

Query: 253 PED 261
           P D
Sbjct: 652 PFD 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,212,091
Number of Sequences: 37544
Number of extensions: 388727
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)