Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_L24
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 332 2e-91
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 332 2e-91
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 331 4e-91
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 331 4e-91
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 322 2e-88
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 322 2e-88
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 306 1e-83
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 168 5e-42
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 166 1e-41
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 166 1e-41
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 166 2e-41
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 166 2e-41
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 164 8e-41
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 163 1e-40
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 163 1e-40
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 161 7e-40
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 108 4e-24
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 108 4e-24
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 31 1.3
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 30 2.2
At5g23380.1 68418.m02734 expressed protein 29 5.2
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 5.2
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 5.2
At1g80580.1 68414.m09453 ethylene-responsive element-binding fam... 28 9.0
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 332 bits (815), Expect = 2e-91
Identities = 155/204 (75%), Positives = 171/204 (83%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYR
Sbjct: 25 CLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR 84
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
QLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+
Sbjct: 85 QLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGG 144
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ERLSVDYGKKS+L F +YP+PQVST+VVEPYNS+
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI-L 203
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEAIYDICRR+L IERPTYTNL
Sbjct: 204 LDNEAIYDICRRSLSIERPTYTNL 227
Score = 56.4 bits (130), Expect = 2e-08
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWELY 176
MRECIS+H+GQAG+Q+GNACWELY
Sbjct: 1 MRECISIHIGQAGIQVGNACWELY 24
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 332 bits (815), Expect = 2e-91
Identities = 155/204 (75%), Positives = 171/204 (83%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYR
Sbjct: 25 CLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR 84
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
QLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+
Sbjct: 85 QLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGG 144
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ERLSVDYGKKS+L F +YP+PQVST+VVEPYNS+
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI-L 203
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEAIYDICRR+L IERPTYTNL
Sbjct: 204 LDNEAIYDICRRSLSIERPTYTNL 227
Score = 56.4 bits (130), Expect = 2e-08
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWELY 176
MRECIS+H+GQAG+Q+GNACWELY
Sbjct: 1 MRECISIHIGQAGIQVGNACWELY 24
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 331 bits (813), Expect = 4e-91
Identities = 155/204 (75%), Positives = 171/204 (83%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYR
Sbjct: 25 CLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR 84
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
QLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+
Sbjct: 85 QLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGG 144
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ERLSVDYGKKS+L F +YP+PQVST+VVEPYNS+
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI-L 203
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEAIYDICRR+L+IERPTYTNL
Sbjct: 204 LDNEAIYDICRRSLNIERPTYTNL 227
Score = 56.4 bits (130), Expect = 2e-08
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWELY 176
MRECIS+H+GQAG+Q+GNACWELY
Sbjct: 1 MRECISIHIGQAGIQVGNACWELY 24
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 331 bits (813), Expect = 4e-91
Identities = 155/204 (75%), Positives = 171/204 (83%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYR
Sbjct: 25 CLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR 84
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
QLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F+
Sbjct: 85 QLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGG 144
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ERLSVDYGKKS+L F +YP+PQVST+VVEPYNS+
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI-L 203
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEAIYDICRR+L+IERPTYTNL
Sbjct: 204 LDNEAIYDICRRSLNIERPTYTNL 227
Score = 56.4 bits (130), Expect = 2e-08
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWELY 176
MRECIS+H+GQAG+Q+GNACWELY
Sbjct: 1 MRECISIHIGQAGIQVGNACWELY 24
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 322 bits (790), Expect = 2e-88
Identities = 151/204 (74%), Positives = 167/204 (81%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGIQPDG MP+D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYR
Sbjct: 25 CLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR 84
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
QLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDR+RKLAD CTGLQGFL+F+
Sbjct: 85 QLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGG 144
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ERLSVDYGKKS+L F IYP+PQVSTAVVEPYNS+
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV-L 203
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEAIYDICRR+LDIERPTYTNL
Sbjct: 204 LDNEAIYDICRRSLDIERPTYTNL 227
Score = 51.2 bits (117), Expect = 8e-07
Identities = 18/24 (75%), Positives = 23/24 (95%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWELY 176
MRE IS+H+GQAG+Q+GN+CWELY
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELY 24
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 322 bits (790), Expect = 2e-88
Identities = 151/204 (74%), Positives = 167/204 (81%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGIQPDG MP+D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYR
Sbjct: 25 CLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR 84
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
QLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDR+RKLAD CTGLQGFL+F+
Sbjct: 85 QLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGG 144
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ERLSVDYGKKS+L F IYP+PQVSTAVVEPYNS+
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV-L 203
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEAIYDICRR+LDIERPTYTNL
Sbjct: 204 LDNEAIYDICRRSLDIERPTYTNL 227
Score = 51.2 bits (117), Expect = 8e-07
Identities = 18/24 (75%), Positives = 23/24 (95%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWELY 176
MRE IS+H+GQAG+Q+GN+CWELY
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELY 24
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 306 bits (752), Expect = 1e-83
Identities = 142/204 (69%), Positives = 165/204 (80%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGIQPDG MP+D T+G D+FNTFFSET +G+HVPRAVF+DLEPTV+DEVRTGTYR
Sbjct: 25 CLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYR 84
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
QLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD L+R+RKLAD CTGLQGFL+F+
Sbjct: 85 QLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGG 144
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ERLSVD+GKKS+L F IYP+PQVSTAVVEPYNS+
Sbjct: 145 TGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVV-L 203
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEAIYDICRR+LDIERPTY+NL
Sbjct: 204 LDNEAIYDICRRSLDIERPTYSNL 227
Score = 51.2 bits (117), Expect = 8e-07
Identities = 18/24 (75%), Positives = 23/24 (95%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWELY 176
MRE IS+H+GQAG+Q+GN+CWELY
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELY 24
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 168 bits (408), Expect = 5e-42
Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 3/207 (1%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG 348
C EHGI P G+ +G D + N +++E G++VPRA+ +DLEP +D VRTG
Sbjct: 25 CDEHGIDPTGRY-----VGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTG 79
Query: 349 TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXX 528
Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 529 XXXXXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXC 708
LL+ ++ +Y + L F+++P+P+VS VVEPYN+ C
Sbjct: 140 GGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEC 199
Query: 709 FSWVDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + P++ +L
Sbjct: 200 MV-LDNEALYDICFRTLKLTTPSFGDL 225
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWEL 173
MRE + + GQ G QIG+ WE+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEV 23
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 166 bits (404), Expect = 1e-41
Identities = 80/204 (39%), Positives = 118/204 (57%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
C EHGI GQ D + + N +F+E GK+VPRAV +DLEP +D +R+G +
Sbjct: 25 CGEHGIDQTGQSCGDTDLQL--ERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFG 82
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGG 142
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ ++ +Y + + F+++P+P+VS VVEPYN+ C
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV- 201
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + PT+ +L
Sbjct: 202 LDNEALYDICFRTLKLANPTFGDL 225
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 166 bits (404), Expect = 1e-41
Identities = 78/204 (38%), Positives = 118/204 (57%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
C EHG+ P G+ D + N +++E G++VPRAV +DLEP +D +R+G Y
Sbjct: 25 CDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYG 83
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGG 143
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ ++ +Y + L F+++P+P+VS VVEPYN+ C
Sbjct: 144 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV- 202
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + P++ +L
Sbjct: 203 LDNEALYDICFRTLKLSTPSFGDL 226
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWEL 173
MRE + V GQ G QIG+ WE+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEV 23
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 166 bits (403), Expect = 2e-41
Identities = 79/204 (38%), Positives = 117/204 (57%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
C EHGI P G+ D + + N +++E G+ VPRAV +DLEP +D +R+G Y
Sbjct: 25 CAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYG 82
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
Q F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 83 QTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGG 142
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ ++ +Y + L F+++P+P+VS VVEPYN+ C
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV- 201
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + P++ +L
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDL 225
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 166 bits (403), Expect = 2e-41
Identities = 79/204 (38%), Positives = 117/204 (57%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
C EHGI P G+ D + + N +++E G+ VPRAV +DLEP +D +R+G Y
Sbjct: 25 CAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYG 82
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
Q F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 83 QTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGG 142
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ ++ +Y + L F+++P+P+VS VVEPYN+ C
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV- 201
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + P++ +L
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDL 225
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 164 bits (398), Expect = 8e-41
Identities = 78/204 (38%), Positives = 118/204 (57%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
C EHGI G+ D T + N +++E G++VPRAV +DLEP +D +R+G +
Sbjct: 25 CDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFG 83
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGG 143
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ ++ +Y + L F+++P+P+VS VVEPYN+ C
Sbjct: 144 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV- 202
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + P++ +L
Sbjct: 203 LDNEALYDICFRTLKLSTPSFGDL 226
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWEL 173
MRE + + GQ G QIG+ WE+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEV 23
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 163 bits (397), Expect = 1e-40
Identities = 78/203 (38%), Positives = 118/203 (58%)
Frame = +1
Query: 181 LEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQ 360
LEHGI G+ D + + N +++E G++VPRAV +DLEP +D VR+G Y Q
Sbjct: 26 LEHGIDQTGRYVGDSELQL--ERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQ 83
Query: 361 LFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXX 540
+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGT 143
Query: 541 XXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSWV 720
LL+ ++ +Y + + F+++P+P+VS VVEPYN+ C +
Sbjct: 144 GSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV-L 202
Query: 721 DNEAIYDICRRNLDIERPTYTNL 789
DNEA+YDIC R L + P++ +L
Sbjct: 203 DNEALYDICFRTLKLSTPSFGDL 225
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 105 MRECISVHVGQAGVQIGNACWEL 173
MRE + + GQ G QIG+ WE+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEV 23
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 163 bits (396), Expect = 1e-40
Identities = 78/204 (38%), Positives = 117/204 (57%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
C EHGI G+ + + + N +++E G+ VPRAV +DLEP +D VR+G Y
Sbjct: 25 CAEHGIDSTGRYQGENDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ C LQGF + H
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGG 142
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ ++ +Y + L F+++P+P+VS VVEPYN+ C
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV- 201
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + P++ +L
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDL 225
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 161 bits (390), Expect = 7e-40
Identities = 78/204 (38%), Positives = 117/204 (57%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
C EHGI GQ D + + + +F+E GK+VPRAV +DLEP +D +R+G +
Sbjct: 25 CDEHGIDHTGQYVGDSPLQL--ERIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFG 82
Query: 358 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 537
Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK A+ LQGF + H
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGG 142
Query: 538 XXXXXXXLLMERLSVDYGKKSELEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXCFSW 717
LL+ ++ +Y + + F+++P+P+VS VVEPYN+ C
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV- 201
Query: 718 VDNEAIYDICRRNLDIERPTYTNL 789
+DNEA+YDIC R L + PT+ +L
Sbjct: 202 LDNEALYDICFRTLKLANPTFGDL 225
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 108 bits (260), Expect = 4e-24
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 3/209 (1%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGI DG + T GG D + FF + ++PRA+ +DLEP V++ ++ G YR
Sbjct: 26 CLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYR 83
Query: 358 QLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXX 531
L++ E + A NN+A G++ GK + + ++D I + AD L+GF++ H
Sbjct: 84 NLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSIA 142
Query: 532 XXXXXXXXXLLMERLSVDYGKKSELEFAIYP-APQVSTAVVEPYNSIXXXXXXXXXXXXC 708
L+E L+ Y KK ++++P + S VV+PYNS+ C
Sbjct: 143 GGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSL-LTLKRLTLNADC 201
Query: 709 FSWVDNEAIYDICRRNLDIERPTYTNLXS 795
+DN A+ I L + PT+ S
Sbjct: 202 VVVLDNTALNRIAVERLHLTNPTFAQTNS 230
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 108 bits (260), Expect = 4e-24
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 3/209 (1%)
Frame = +1
Query: 178 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 357
CLEHGI DG + T GG D + FF + ++PRA+ +DLEP V++ ++ G YR
Sbjct: 26 CLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYR 83
Query: 358 QLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXX 531
L++ E + A NN+A G++ GK + + ++D I + AD L+GF++ H
Sbjct: 84 NLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSIA 142
Query: 532 XXXXXXXXXLLMERLSVDYGKKSELEFAIYP-APQVSTAVVEPYNSIXXXXXXXXXXXXC 708
L+E L+ Y KK ++++P + S VV+PYNS+ C
Sbjct: 143 GGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSL-LTLKRLTLNADC 201
Query: 709 FSWVDNEAIYDICRRNLDIERPTYTNLXS 795
+DN A+ I L + PT+ S
Sbjct: 202 VVVLDNTALGRIAVERLHLTNPTFAQTNS 230
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Frame = -3
Query: 543 AGTSTEGVEDQESLQTGTLVSELADSVQNQIYDFLSNXXXXXXXXXGRIFLTSNKLFWMK 364
+G TEGVED S LV D ++ QI D + IF L +++
Sbjct: 609 SGLMTEGVEDHTSSDINLLVDRSFDKIEKQIRDSSDS-----SYGNEEIFEAFQSLLYVR 663
Query: 363 QLSVCASADLINNSR---FKIDEDSTGYVLASSGLAEESVERIVSTPD 229
L +++ F++ S +AS LA E+I D
Sbjct: 664 DLEFSLCKEMLGEGELISFQVSNLSDELKIASQELAFVKEEKIALEKD 711
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 184 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVD 333
E GIQ +G + ++ + G D +T F + A P FV+L+ +D
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVELQNEELD 929
>At5g23380.1 68418.m02734 expressed protein
Length = 301
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = -1
Query: 299 ARGTCLPAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQVKLPAGITDLDSGLANVYR 120
ARG+ +P++L + +E P ++ IW + + +++P + + DS + Y
Sbjct: 28 ARGSSSSSPIALGAIEEEEVRKPRIVLNDIWSACKNWSTVGIEVPLSLENFDSDVKQYYN 87
Query: 119 DALT 108
+L+
Sbjct: 88 PSLS 91
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/103 (25%), Positives = 39/103 (37%)
Frame = -3
Query: 747 ADVIDGFIVDP*KAQXRVLKGCVGGEDRVVGLDDGSGNLRRGVDGELQFRLLAVVNGETL 568
ADV D +++ +A +KG DRV G G G +R + E Q R + +NG
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE-QIRAMTEMNGVPC 222
Query: 567 HQ*GSEPRAGTSTEGVEDQESLQTGTLVSELADSVQNQIYDFL 439
S +GV Q + D+ N F+
Sbjct: 223 STRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFV 265
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/103 (25%), Positives = 39/103 (37%)
Frame = -3
Query: 747 ADVIDGFIVDP*KAQXRVLKGCVGGEDRVVGLDDGSGNLRRGVDGELQFRLLAVVNGETL 568
ADV D +++ +A +KG DRV G G G +R + E Q R + +NG
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE-QIRAMTEMNGVPC 222
Query: 567 HQ*GSEPRAGTSTEGVEDQESLQTGTLVSELADSVQNQIYDFL 439
S +GV Q + D+ N F+
Sbjct: 223 STRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFV 265
>At1g80580.1 68414.m09453 ethylene-responsive element-binding family
protein contains AP2 DNA-binding domain; similar to
EREBP-3 (GI:1208496) [Nicotiana tabacum]
Length = 256
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 784 WCRLGAQYRDYXGRCHRWL 728
W R A+ RD GRC WL
Sbjct: 124 WGRWSAEIRDRIGRCRHWL 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,277,389
Number of Sequences: 28952
Number of extensions: 399233
Number of successful extensions: 1179
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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