Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_L22
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 26 0.84
12_01_0011 + 90859-91169,92075-92622,92701-92803,92899-92998,934... 30 2.0
11_01_0011 + 95001-95311,96217-96764,96843-96945,97041-97140,975... 30 2.0
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 29 3.5
01_06_0508 - 29897536-29897982 29 3.5
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 29 6.2
01_06_1792 - 39912714-39913559 28 8.1
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 25.8 bits (54), Expect(2) = 0.84
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 204 RYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGR 323
RY+ SRDR DE YK ++ N S R GR
Sbjct: 222 RYSRDSNEQRYSRDREDE-YKGSHSNHEYAEGSGRRSYGR 260
Score = 24.2 bits (50), Expect(2) = 0.84
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 426 QENYGGERRSFGGDERRRSPARES 497
+ +YG +R S+G DE S R+S
Sbjct: 255 RRSYGRDRDSYGDDEAYSSRGRQS 278
>12_01_0011 +
90859-91169,92075-92622,92701-92803,92899-92998,
93453-93529,93608-93686,94108-94226,94330-94423
Length = 476
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 192 NNDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKR 347
++D GG +++S S K E S + EYGG GG +R
Sbjct: 36 HDDDNVEEGGGGWDSSLSDFAWSSSKDEEEEGSTSTEGGEYGGHGGGRRERR 87
>11_01_0011 +
95001-95311,96217-96764,96843-96945,97041-97140,
97595-97671,97750-97828,98250-98368,98472-98565
Length = 476
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 192 NNDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKR 347
++D GG +++S S K E S + EYGG GG +R
Sbjct: 36 HDDDNVEEGGGGWDSSLSDFAWSSSKDEEEEGSTSTEGGEYGGHGGGRRERR 87
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 29.5 bits (63), Expect = 3.5
Identities = 29/110 (26%), Positives = 38/110 (34%)
Frame = +3
Query: 198 DTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEGPAERR 377
D G R SR D+ R S + S+ E G R R+R R P+
Sbjct: 93 DAEEEGGDRRRRPSRVSDDDKEGGRRRRRRSTD-SDDERGDR----HRRRHRRRSPSSES 147
Query: 378 XXXXXXXXXXXXXXXRQENYGGERRSFGGDERRRSPARESYRKPSGMGPP 527
R++ R G +ERRRSP R+ P PP
Sbjct: 148 SDGGRSRRHRRDESSRRQRDERRRDRGGREERRRSPDRKEPTPPLPPPPP 197
>01_06_0508 - 29897536-29897982
Length = 148
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 686 LDAXKGTVVIEGSISEPPRKGG--TRARCAAIG 594
L A +G V EG++ PP + G T++RCAA G
Sbjct: 61 LPAPEGVPVDEGAMPPPPPRHGAKTKSRCAACG 93
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -1
Query: 342 FFLVILLYLHTLCLNS 295
FF+VILLY +T+CL+S
Sbjct: 720 FFIVILLYNYTICLSS 735
>01_06_1792 - 39912714-39913559
Length = 281
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 195 NDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSP 335
N + S + + +DR + S K ++ +S NY+ YGG G+P
Sbjct: 65 NKHKITSSHKHKDDEKDRNNHS-KDSHGGGNSSNYNKDSYGGNSGNP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,207,003
Number of Sequences: 37544
Number of extensions: 310145
Number of successful extensions: 1211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -