Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L22
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    38   0.006
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    31   0.96 
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    30   2.2  
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    30   2.2  
At4g18335.1 68417.m02720 hypothetical protein                          29   3.9  
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ...    29   5.1  
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ...    29   5.1  
At2g24590.1 68415.m02936 splicing factor, putative similar to to...    28   9.0  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -1

Query: 315 HTLCLNS*QSFHFDMFFCKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHGF 148
           HTL L S ++  FD F C+ H+        S   Y+N ++YC    +  HHG H F
Sbjct: 122 HTLSLRSGRNTKFDCFSCRKHM--------SPLTYHNYHYYCKTCDMEFHHGCHTF 169


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
 Frame = +3

Query: 201 TRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGG-RGGSPERKRMRMEGPAERR 377
           ++ NSG +SY+  R    +S   +  +++S++   R     R  S  R   R   P  RR
Sbjct: 221 SKTNSGSKSYSGER----KSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRR 276

Query: 378 XXXXXXXXXXXXXXX-RQENYGGERRSFGGDERRRSPARESYRKPSGMGPPR 530
                           R+  + G R+S     RRRSP+  + R+ S   P R
Sbjct: 277 IHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPAR 328


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 35/137 (25%), Positives = 45/137 (32%), Gaps = 4/137 (2%)
 Frame = +3

Query: 228 YNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEGPAERRXXXXXXXXXX 407
           ++  RD +D       +N   V  S+++ GGRGG   R+     G  E            
Sbjct: 45  FDDERDALDAISALDRKNGWRVELSHKDKGGRGGGGGRR-----GGIEDSKCYECGELGH 99

Query: 408 XXXXXRQENYGGERRSFGGDERRRSP----ARESYRKPSGMGPPREXXXXXXXXXXXXXX 575
                R+   G  RR      RRRSP    AR S        PPR               
Sbjct: 100 FARECRR-GRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSR 158

Query: 576 XXXXXASYRGTPRSRAS 626
                 S R +PR R S
Sbjct: 159 SPPYRGSRRDSPRRRDS 175


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 35/137 (25%), Positives = 45/137 (32%), Gaps = 4/137 (2%)
 Frame = +3

Query: 228 YNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEGPAERRXXXXXXXXXX 407
           ++  RD +D       +N   V  S+++ GGRGG   R+     G  E            
Sbjct: 45  FDDERDALDAISALDRKNGWRVELSHKDKGGRGGGGGRR-----GGIEDSKCYECGELGH 99

Query: 408 XXXXXRQENYGGERRSFGGDERRRSP----ARESYRKPSGMGPPREXXXXXXXXXXXXXX 575
                R+   G  RR      RRRSP    AR S        PPR               
Sbjct: 100 FARECRR-GRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSR 158

Query: 576 XXXXXASYRGTPRSRAS 626
                 S R +PR R S
Sbjct: 159 SPPYRGSRRDSPRRRDS 175


>At4g18335.1 68417.m02720 hypothetical protein
          Length = 164

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 216 RYYNEYHYCMMNSLRHHHGLH 154
           RY ++Y+Y   ++LRH  GLH
Sbjct: 83  RYNHQYYYYYRHTLRHRRGLH 103


>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 301 QTESMEVEEDHQKEKE*GWRDQPKDVAMTAAAVITAGPTAQGRKITEAKGGPSVGMNEDD 480
           ++E+ + EE   + +E   R++  DV  T + +     T +  K  E  GG +       
Sbjct: 72  ESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQEGKL 131

Query: 481 RPPEK 495
           + P+K
Sbjct: 132 KKPDK 136


>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 301 QTESMEVEEDHQKEKE*GWRDQPKDVAMTAAAVITAGPTAQGRKITEAKGGPSVGMNEDD 480
           ++E+ + EE   + +E   R++  DV  T + +     T +  K  E  GG +       
Sbjct: 72  ESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQEGKL 131

Query: 481 RPPEK 495
           + P+K
Sbjct: 132 KKPDK 136


>At2g24590.1 68415.m02936 splicing factor, putative similar to to
           RSZp22 protein [Arabidopsis thaliana]
           gi|2582645|emb|CAA05352
          Length = 196

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/58 (34%), Positives = 23/58 (39%)
 Frame = +3

Query: 201 TRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEGPAER 374
           +R  SGGR  + SR R    Y+K     S      R Y  R  SP   R R   P  R
Sbjct: 113 SRGGSGGRRRSRSRSRSPPRYRK-----SPTYGGRRSYSPRARSPPPPRRRSPSPRGR 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,584
Number of Sequences: 28952
Number of extensions: 227039
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)