Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L21
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.4  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   4.5  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   7.9  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   7.9  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   7.9  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.9  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
 Frame = +1

Query: 340 QFIAKEAGALFDSSLLEDT-PSSSTNGT----ETLVPE--DNLYALMPPFETFLNVDKTA 498
           +F+  ++G++    + +D  P SS++      +T+ P   +N Y +  P + +    +  
Sbjct: 64  KFLQGKSGSVKVQEIPQDQLPKSSSDNAVTDRKTISPSGINNQYVIRNPKDVYYATVQAG 123

Query: 499 RLRHFFDNVKTGELI 543
           +L H FD VKT EL+
Sbjct: 124 KL-HLFDPVKTSELL 137


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 376  SSLLEDTPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAV 555
            SSL   +PS ST G E  + +D  Y L+  +E    ++  A + H F      +  + A 
Sbjct: 1603 SSLRNVSPSESTGGYEGCIFDDQQYQLL--YELCERLEDHAAILHGFPEPPPCDTGLAAP 1660

Query: 556  INR 564
            +N+
Sbjct: 1661 VNQ 1663


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 271 FAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDS-SLLEDTPS 402
           + +YQ  H HL +  +  R  +H+F+   A AL +S  LL D+ S
Sbjct: 321 YELYQ--HSHLGYGLKEARKLIHKFVLNNAEALKESLELLGDSTS 363


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 397 PSSSTNGTETLVP 435
           P+ STNGTET +P
Sbjct: 547 PNGSTNGTETFIP 559


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 460 PPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 591
           P F  FLN+DK       F+  +  EL  G++  R  S +  KV
Sbjct: 35  PSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKV 78


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 99  NVTT*LRAGKKRI*MDPLLDASL 167
           NV T L   K+R+ +DPL+D SL
Sbjct: 271 NVVTCLDCKKERVAVDPLMDISL 293


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 599 VQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGIN 453
           + R++S+ P     I+ P ISS    L KK  +  + +TF + +N  +N
Sbjct: 74  MNRSISVPPTN---ISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,801
Number of Sequences: 5004
Number of extensions: 63109
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)