Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_L20
(820 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 204 5e-53
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 135 3e-32
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 129 2e-30
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 125 4e-29
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 105 4e-23
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 105 5e-23
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 90 2e-18
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 88 8e-18
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 86 2e-17
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 81 1e-15
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 52 6e-07
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 43 3e-04
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 42 7e-04
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 42 7e-04
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 40 0.002
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 40 0.002
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 40 0.002
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 38 0.011
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.23
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 32 0.40
At1g05940.1 68414.m00623 amino acid permease family protein low ... 32 0.53
At5g64910.1 68418.m08165 expressed protein ; expression support... 29 2.8
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P... 29 3.7
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 4.9
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 6.5
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 28 8.6
At1g14280.1 68414.m01693 phytochrome kinase, putative contains s... 28 8.6
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 204 bits (498), Expect = 5e-53
Identities = 104/162 (64%), Positives = 127/162 (78%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILA 337
P MDKLI D G ISNDGATIMKLLDI+HPAAK LVDIAKSQD+EVGDGTT+VV+LA
Sbjct: 45 PRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLA 104
Query: 338 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 517
E LK KPF+E+GVH + LIR+ RTAS LAI K+KE AV I+ KS EE++ LL KCA+T
Sbjct: 105 AEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAAT 164
Query: 518 AMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPG 643
+SSKLI +K+ F+ +VVDAV+++ L++IGIKKVPG
Sbjct: 165 TLSSKLIGGEKEFFATMVVDAVMAIGND-DRLNLIGIKKVPG 205
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +1
Query: 58 LREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRG 165
L+EGTD +QGK QLVSNINAC V D VRTTLGPRG
Sbjct: 12 LKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRG 47
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +3
Query: 630 RRFPGGALEDSXLVPGVAFXKTFSYAGFEMXPKTY 734
++ PGG + DS LV GVAF KTFSYAGFE PK +
Sbjct: 201 KKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQPKKF 235
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 135 bits (327), Expect = 3e-32
Identities = 70/145 (48%), Positives = 98/145 (67%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILA 337
PV +DK++VD G I+NDGATI+++L++ HPAAK LV++A+ QD EVGDGTTSVVI+A
Sbjct: 41 PVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVA 100
Query: 338 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 517
E+LKR V +HP +I R A R + + I+E K+ K + + L+ CA T
Sbjct: 101 AELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEE---KLVTKVEKLGKVPLINCAKT 157
Query: 518 AMSSKLIHQQKDHFSKIVVDAVLSL 592
+MSSKLI D F+ +VV+AVLS+
Sbjct: 158 SMSSKLISGDSDFFANLVVEAVLSV 182
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 73 DQTQGKPQLVSNINACQLVVDAVRTTLGPRG 165
D+ G+ N+ ACQ V + V+T+LGP G
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVG 43
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 129 bits (312), Expect = 2e-30
Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 3/167 (1%)
Frame = +2
Query: 158 PVXMDKLIVDHN-GKAV-ISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVI 331
P MDK++ G AV ++NDGATI+K L I +PAAK LVDI+K QD EVGDGTTSVV+
Sbjct: 40 PKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVV 99
Query: 332 LAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNK-SPEEQRDLLLKC 508
LAGE+L+ + V +HP +I R AS A + ++ IDNK + E+ R LLK
Sbjct: 100 LAGELLREAEKLVASKIHPMTIIAGYRMASECARNALLKRV--IDNKDNAEKFRSDLLKI 157
Query: 509 ASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGWS 649
A T + SK++ Q K+HF+++ VDAV L L+ I I K PG S
Sbjct: 158 AMTTLCSKILSQDKEHFAEMAVDAVFRLKGS-TNLEAIQIIKKPGGS 203
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 125 bits (301), Expect = 4e-29
Identities = 66/162 (40%), Positives = 104/162 (64%), Gaps = 2/162 (1%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILA 337
P MDK+I NG+ +I+NDGATI+ ++++ PAAK LV+++KSQD+ GDGTT+VV++A
Sbjct: 50 PKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIA 109
Query: 338 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 517
G +LK + + G+HP V+ ++ A AI+ + AV ++ RD L+K AST
Sbjct: 110 GALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPVE----LTDRDSLVKSAST 165
Query: 518 AMSSKLIHQQKDHFSKIVVDAVLSLDTPLLP--LDMIGIKKV 637
+++SK++ Q + + VDAVLS+ P P +D+ IK V
Sbjct: 166 SLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIV 207
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 103 SNINACQLVVDAVRTTLGPRG 165
+NIN+ + V DAVRT+LGP+G
Sbjct: 32 ANINSARAVSDAVRTSLGPKG 52
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 105 bits (252), Expect = 4e-23
Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 7/169 (4%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILA 337
P M K+++D G V++NDG I++ LD+ HPAAK++++++++QD EVGDGTTSV++LA
Sbjct: 41 PRSMLKMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLA 100
Query: 338 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 517
GE+L + F+E+ HP V+ RA A +I + + A+ ID + L+ C T
Sbjct: 101 GEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGT 160
Query: 518 AMSSKLIHQQKDHFSKIVVDAV----LSLDTPLLPLDM---IGIKKVPG 643
+S Q D + + +DA + L L +D+ I ++KVPG
Sbjct: 161 KFTS----QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPG 205
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 106 NINACQLVVDAVRTTLGPR 162
NI A + V D +RTTLGPR
Sbjct: 24 NIQASKAVADIIRTTLGPR 42
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 105 bits (251), Expect = 5e-23
Identities = 58/166 (34%), Positives = 104/166 (62%), Gaps = 4/166 (2%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILA 337
P MDK++ +G I+NDGATI++ +D+ + AK +V++++SQD E+GDGTT VV++A
Sbjct: 50 PKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMA 109
Query: 338 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 517
G +L++ + ++ G+HP + ASR+A+E ++ A K + + L++ T
Sbjct: 110 GALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFE--FDVNNYEPLVQTCMT 167
Query: 518 AMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIK-KVPG 643
+SSK++++ K ++I V AVL+ L+ + LD+I ++ KV G
Sbjct: 168 TLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGG 213
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 89.8 bits (213), Expect = 2e-18
Identities = 48/153 (31%), Positives = 84/153 (54%)
Frame = +2
Query: 173 KLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILK 352
K++V +G ++ DG T++K + I +P A + A +QD GDGTTS VI GE++K
Sbjct: 44 KMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMK 103
Query: 353 RLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSK 532
+ + ++EG+HPRVL+ A R ++ + + E +++L A T + +K
Sbjct: 104 QSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPV-VMGDEPDKEILKMVARTTLRTK 162
Query: 533 LIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 631
L D + IVV++VL + P P+D+ ++
Sbjct: 163 LYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVE 195
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 87.8 bits (208), Expect = 8e-18
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILA 337
P M+K++++H K ++ND ATI+ L+I HPAAK LV AK+Q E+GDG + A
Sbjct: 49 PNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFA 108
Query: 338 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPE-EQRDLLLKCAS 514
GE+L+ + + G+HP +I A A+E I EQ V+ +++ + +D ++
Sbjct: 109 GELLQNAEELIRMGLHPSEIISGYTKAVSKAVE-ILEQLVETGSETMDVRNKDEVISRMR 167
Query: 515 TAMSSKLIHQQKDHFSKIVVDAVLSL 592
A++SK Q+ + +V DA + +
Sbjct: 168 AAVASKQFGQE-EIICSLVTDACIQV 192
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 58 LREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRG 165
L+EG G + ++ NI AC+ + RT+LGP G
Sbjct: 15 LKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNG 51
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 86.2 bits (204), Expect = 2e-17
Identities = 47/153 (30%), Positives = 83/153 (54%)
Frame = +2
Query: 173 KLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILK 352
K++V +G ++ DG T++K + I +P A + A +QD GDGTTS VI GE++K
Sbjct: 44 KMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMK 103
Query: 353 RLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSK 532
+ + ++EG+HPRVL+ A R ++ + + E +++L A T + +K
Sbjct: 104 QSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPV-VMGDEVDKEILKMVARTTLRTK 162
Query: 533 LIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 631
L D + IVV++VL + P +D+ ++
Sbjct: 163 LYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVE 195
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 80.6 bits (190), Expect = 1e-15
Identities = 46/139 (33%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Frame = +2
Query: 239 LDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTA 418
+D+ + AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 419 SRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLS--- 589
SR+A+E ++ A K + + L++ T +SSK++++ K ++I V AVL+
Sbjct: 61 SRVAVEHLERIAQKFE--FDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD 118
Query: 590 LDTPLLPLDMIGIK-KVPG 643
L+ + LD+I ++ KV G
Sbjct: 119 LERRDVNLDLIKVEGKVGG 137
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 51.6 bits (118), Expect = 6e-07
Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Frame = +2
Query: 176 LIVDHNGKAVISNDGATIMKLLDI---IHPAAKTLV-DIAKSQDAEVGDGTTSVVILAGE 343
+++D G + NDG TI + +++ + A L+ ++A + GDGTT+ ILA E
Sbjct: 83 VVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILARE 142
Query: 344 ILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAS-TA 520
I+K V G +P L R + + IE+++++A P + RD + AS +A
Sbjct: 143 IIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA------RPVKGRDDIRAVASISA 196
Query: 521 MSSKLIHQQ-KDHFSKIVVDAVLSLDT 598
+ LI D K+ D VLS+++
Sbjct: 197 GNDDLIGSMIADAIDKVGPDGVLSIES 223
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Frame = +2
Query: 194 GKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLK 361
G I NDG T+ + +++ P AK + A + GDGTT+ V+LA ++
Sbjct: 96 GSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGV 155
Query: 362 PFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 469
V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 156 KVVAAGANPVLITRGIEKTTKALVAELKKMSKEVED 191
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +2
Query: 194 GKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLK 361
G I NDG T+ + +++ P AK + A + GDGTT+ V+LA +
Sbjct: 100 GSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGV 159
Query: 362 PFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 469
V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 160 KVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +2
Query: 194 GKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLK 361
G I NDG T+ + +++ P AK + A + GDGTT+ V+LA +
Sbjct: 100 GSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGV 159
Query: 362 PFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 469
V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 160 KVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +2
Query: 206 ISNDGATIMK---LLDIIHPAAKTLV-DIAKSQDAEVGDGTTSVVILAGEILK 352
+ NDG TI K L D I A TL+ ++A + GDGTT+ +ILA E++K
Sbjct: 80 VINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIK 132
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +2
Query: 194 GKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLK 361
G I NDG T+ + +++ P AK + A + GDGTT+ V+LA +
Sbjct: 96 GSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGV 155
Query: 362 PFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 469
V G +P ++ R + ++ + ++K + ++++
Sbjct: 156 KVVAAGANPVLITRGIEKTAKALVNELKLMSKEVED 191
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEV----GDGTTSV 325
P + ++ + G I NDG T++K +++ P V + + A+ GDG+T+
Sbjct: 72 PKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTS 131
Query: 326 VILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 469
+ILA ++ + G +P + R + ++ + ++K + +I++
Sbjct: 132 IILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIED 179
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 37.5 bits (83), Expect = 0.011
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQDAEVGDGTTSV 325
P + +I G I+ DG T+ K + A A+ + +A + + GDGTT
Sbjct: 63 PKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTTCA 122
Query: 326 VILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 505
+L IL V GV+ L + A + +K +AV I +PEE +
Sbjct: 123 TVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMI--STPEEITQVATI 180
Query: 506 CASTAMS-SKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMI-GIKKVPGWSS*RFVPGSRS 679
A+ +LI + + K V V +T L+++ G+K G+ S F+ ++
Sbjct: 181 SANGEREIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLARGYISPYFITDEKT 240
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.1 bits (72), Expect = 0.23
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Frame = +2
Query: 194 GKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLK 361
G ++ DG T+ K ++ I + A + +A + + GDGTT +L I
Sbjct: 75 GAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGC 134
Query: 362 PFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIH 541
V G++ L R + A + +K +A ++ + S E + + +LI
Sbjct: 135 KSVAAGMNAMDLRRGISMAVDAVVTNLKSKA-RMISTSEEIAQVGTISANGEREIGELIA 193
Query: 542 QQKDHFSKIVVDAVLSLDTPLLPLDMI-GIKKVPGWSS*RFVPGSRS 679
+ + K V + T L+++ G+K G++S F+ ++
Sbjct: 194 KAMEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKT 240
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +2
Query: 158 PVXMDKLIVDHNGKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQDAEVGDGTTSV 325
P + +I G ++ DG T+ K ++ I + A + +A + + GDGTT
Sbjct: 64 PKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTTCA 123
Query: 326 VILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 454
+L I V G++ L R ++ A + ++ +A
Sbjct: 124 TVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRA 166
>At1g05940.1 68414.m00623 amino acid permease family protein low
similarity to SP|P30823 High-affinity cationic amino
acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
Pfam profile PF00324: Amino acid permease
Length = 569
Score = 31.9 bits (69), Expect = 0.53
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 173 KLIVD-HNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEIL 349
+L++D H G A IS A+ L + PA K + + E+ G S+ ILA +L
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMGSGKELLGGLLSLNILAPILL 195
Query: 350 KRLKPFVEEGVHPRVLIRAVRTASRLAI 433
L + +GV + +V TA+++ I
Sbjct: 196 ALLTLVLCQGVRESSAVNSVMTATKVVI 223
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 548 KDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPG 643
KD ++V V+ +D+P+ P D IG+ V G
Sbjct: 245 KDENKDVLVPVVVCIDSPIPPSDEIGVASVQG 276
>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 939
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 179 IVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEI 346
+VD A I+++ AT++ + I T+VD+ DAE+ D T ++V + G+I
Sbjct: 480 VVDVQSDAEIADNTATVVDVQ--IADNTATVVDV--QSDAEIADNTATLVDVQGDI 531
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 347 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 487
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 415 CSDCSDQNTRVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRL-CN-IHKSFSG 257
C D + +N+F NK+ P + Q Y G + L +L CN HK F G
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVG 114
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 82 QGKPQLVSNINACQLVVDAVRTTLG--PRGYGQADCRSQWKGGY 207
Q + + N+N + + VR + G P ++D +QW GGY
Sbjct: 373 QSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWNGGY 416
>At1g14280.1 68414.m01693 phytochrome kinase, putative contains
similarity to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 442
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 679 TPGTRXESSRAPPGNLLDSNHVERQKWSVQRQDSINNNLRE 557
TP R ESS LL S +VE++K ++++ S N+ +E
Sbjct: 124 TPSLRSESSWNSQSLLLQSKYVEKKK-NIKKNSSCNSYFQE 163
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487,409
Number of Sequences: 28952
Number of extensions: 335819
Number of successful extensions: 1011
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -