Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L19
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...   111   9e-26
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    30   0.36 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    29   0.84 
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    28   1.5  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    28   1.9  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   5.9  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score =  111 bits (268), Expect = 9e-26
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 9/190 (4%)
 Frame = +2

Query: 203 PFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAE 382
           PFKT   A+H    +   TI+V  K+ +++++    + LKK +K   +   K    A+AE
Sbjct: 38  PFKT---AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAE 93

Query: 383 EENT-------EKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRL 541
                      E  ++ L+ AK I+L+E    P A  + I ++T  R  R+ + GWVHR+
Sbjct: 94  AAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRM 153

Query: 542 RRQGKSLAFLTLRDGTGYLQCVLHGLLCQ--TYNALVLSTESSVVLYGKLXAVPEGXKAP 715
           R Q K + F+ LRDGTG+LQCVL G +    +Y+ + L  ES+V LYG +  +PEG  AP
Sbjct: 154 RTQ-KGIIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTVCLYGVIKELPEGKSAP 212

Query: 716 GGHXLTXDXW 745
           G H L  D +
Sbjct: 213 GNHELVVDYY 222


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 497 HRGQRICIRGWVHRLRRQGKSLAFLTLRDGT 589
           H G+ I I GWV  +R+  K++ F  + DGT
Sbjct: 18  HNGELISINGWVRSIRKL-KNVCFAMVSDGT 47


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 581 DGTGYLQCVLHGLLCQTYNALVLSTES 661
           D  GYL+C+LHG   + YN  +   +S
Sbjct: 295 DHLGYLECILHGDSAKRYNMSIEKVDS 321


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 193 ERKTIQDNIESNASCWQRAISHNL 264
           E KTI DN+ SN   WQ+   H +
Sbjct: 59  ELKTIDDNVHSNNLSWQKIQEHEV 82


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 122 VGNLSLSEIYTSXXXXXXXXXXXXXEKPFKTILKAMHHAGKEPFP 256
           VGN+ LS I  +                FK  L+ +   GK+PFP
Sbjct: 113 VGNIELSRIVNADVRLDSSKFDIGIRPSFKNALEELTKKGKKPFP 157


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 425 KKILLQEDPSLPKATVVKICETTEHR 502
           +KILL E P  P A   K+CET   R
Sbjct: 101 RKILLTEPPMNPVANREKMCETMFER 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,945
Number of Sequences: 5004
Number of extensions: 61608
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)