Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L19
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)            181   6e-46
SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31)                  37   0.024
SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              31   1.6  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)                    30   2.1  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                30   2.7  
SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      29   3.6  
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)        29   4.8  
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_43914| Best HMM Match : IRK (HMM E-Value=5.3)                       28   8.4  

>SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)
          Length = 305

 Score =  181 bits (441), Expect = 6e-46
 Identities = 88/169 (52%), Positives = 122/169 (72%), Gaps = 1/169 (0%)
 Frame = +2

Query: 200 KPFKTILKAMHHA-GKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAK 376
           KPFK++L+A+ HA G    P I VDSK + + ++  AK+QLKK  K++ +E  K+ ++ K
Sbjct: 81  KPFKSVLQALQHAEGDAHQPVIMVDSKAEGERFEKIAKAQLKKATKLYQQEKRKSEEREK 140

Query: 377 AEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRLRRQGK 556
            E E  ++R +NL++A+ I ++ D SLP A  +KI +TT+ R QR+ I GWVHRLRRQGK
Sbjct: 141 KEAEKAQQREKNLEDARNITIKPDESLPVAKQIKIRDTTDCREQRVKIFGWVHRLRRQGK 200

Query: 557 SLAFLTLRDGTGYLQCVLHGLLCQTYNALVLSTESSVVLYGKLXAVPEG 703
           +L F+ LRDGTG+LQCVL  +LC TY ALVL TE++V LYG + AVPEG
Sbjct: 201 NLMFVVLRDGTGFLQCVLTDVLCHTYEALVLCTEATVCLYGVVKAVPEG 249


>SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31)
          Length = 721

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 323 KIQKIWVRENYKAMDKAKAEEENTEKRSQNLD-EAKKILLQEDPSLPKATVVKICETTEH 499
           KI+KI V  ++K        +    K     D + +KI +  D  + K  + KIC T+ H
Sbjct: 113 KIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICIWKICVTSNH 172

Query: 500 RGQRICIRGWVHRLRR 547
           + ++IC+    H++R+
Sbjct: 173 KIRKICVTS-DHKIRK 187



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 323 KIQKIWVRENYKAMDKAKAEEENTEKRSQNLD-EAKKILLQEDPSLPKATVVKICETTEH 499
           KI+KI V  ++K        +    K     D + +KI + +        + KIC T++H
Sbjct: 124 KIRKICVTSDHKIRKICVTSDHKIRKICVTSDHKIRKICIWKICVTSNHKIRKICVTSDH 183

Query: 500 RGQRICIRGWVHRLRR 547
           + ++ICI    H++R+
Sbjct: 184 KIRKICITS-DHKIRK 198


>SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +2

Query: 281 DTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLP 460
           DT  Y    + QLK  +++ V+E         +E+E  EK  +  DE  K+  Q + S P
Sbjct: 300 DTPHYLKDKRIQLKGDEEVKVKELLAKAGTKGSEDEEDEKEQEKDDEGPKLQKQVETSKP 359

Query: 461 -----KATVVKICETTEH 499
                  TV K+ E  E+
Sbjct: 360 GEEQEMVTVTKVVEEIEY 377


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 284 TKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKK 430
           ++ Y      QL+K+++    E+ +  D+A+     T KR +NL+E KK
Sbjct: 195 SEKYKSIQSEQLEKLKEQTRPESEELRDRARQLSRETNKRRKNLEEKKK 243


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 350 NYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDP 451
           NY  +D++K  +EN   ++     AKKI ++E+P
Sbjct: 282 NYTEVDESKPADENKNDKTDGAKTAKKINIKENP 315


>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
          Length = 443

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +2

Query: 308 KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPK 463
           +SQ +++QKIW     +A     AE +   +++Q+L E KKI  ++  S P+
Sbjct: 368 RSQKRRVQKIW---RLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPR 416


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 293  YDVAAKSQLKKIQKIWVRENYK----AMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLP 460
            Y   AK Q+ K  K+  R   +    +MD+   EE +T +  ++  + K+ +      LP
Sbjct: 1682 YGFTAKGQVAKDLKLGKRRRERRGEESMDEDSCEETDTNETRESTKKMKESMTASPDGLP 1741

Query: 461  KATVVKICETTEHRGQR 511
             +   K+C+   +R ++
Sbjct: 1742 DSPKEKMCDGRNNRKKK 1758


>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 254 PTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQ 409
           PT     K + K   +  KSQ +K +K  + E   A    K E+E   K+S+
Sbjct: 258 PTAGQSKKTEAKQEKIEKKSQEQKPKKEKIHEKESATSNEKKEQEKERKKSE 309


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +2

Query: 263 YVDSKDDTKDYDVAA---KSQLKKIQKIWVRENYKAMDKAKAEEENTEK 400
           Y   +DDTK+ D AA   K++L++ + + VRE + +  +A   +E+ E+
Sbjct: 267 YTCCEDDTKEVDAAAAADKARLQRSKSLKVREGFSSAWEAIRVKESVER 315


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 536  DVPIL*CISSDHGVQLFHIFSQQWPLVNLDPLAEESSLPHLSFEISFQ 393
            D+P+  C+ SD G Q+  + ++  P+V+L  L  E     LS ++S Q
Sbjct: 1553 DLPVSSCVLSDDGDQVVMVINKSRPIVSL-VLTHEVGSRELSVDVSNQ 1599


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 307 CCYI-IILSVIF*VNINCGKWLFASMMHCFQYCLEWFFFRTITCIVIAILIRGIYLGQAK 131
           CC+I ++LSV+F      G  L      CF   +   F+R    +V+++L R  + G   
Sbjct: 12  CCFIGVVLSVLFYRCCFIGVVLLVLYRCCFIGVISVLFYRCYIDVVLSVLYRCCFTGVIS 71

Query: 130 V 128
           V
Sbjct: 72  V 72


>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 251 FPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDK-AKAEEENTEKRSQNLDEAK 427
           F  +Y +   +TK+  V AKS  K  +    ++  KA+ K  +A +    + S      K
Sbjct: 109 FFDLYREYDGETKELFVKAKSSAKSAETGKAQKAKKAVQKGVRAAKTKKVRTSVKFHRPK 168

Query: 428 KILLQEDPSLPKATVVKI 481
            + L+ +P  P+ +  +I
Sbjct: 169 TLSLRRNPKYPRTSAPRI 186


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
 Frame = +2

Query: 215 ILKAMHHAGKEPFPTIYVDSKDDTKD-----YDVAAKSQLKKIQKIWVRENY------KA 361
           I ++M  A KE    ++ D   + K+     +D+  + +  ++Q +  + N       K 
Sbjct: 604 ITESMEQAEKEIHQQLHKDDDTECKESVKEWHDMVEQQRFARLQHLLDKSNIYCQFLLKR 663

Query: 362 MDKAKAEEENTEKRSQNLDEAK 427
           M+  + EEEN +KR +  +E K
Sbjct: 664 MEDQRKEEENRQKRQEKKEENK 685


>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +2

Query: 272 SKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDP 451
           S+D  K+ ++A K    K +K+      K ++K  AEEE  +K  ++ D  K    ++  
Sbjct: 85  SQDTKKEGEMAEKKAKAKERKL-----QKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKVT 139

Query: 452 SLPKATVVK 478
           S PK+  VK
Sbjct: 140 SEPKSPKVK 148


>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1148

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 263 YVDSKDDTKDYDVAAKSQLKKIQKIWVRENYK-AMDKAKAEEENTEKR 403
           Y  S+DD +DY+   ++Q ++      R  Y+  M+K +  EE TEK+
Sbjct: 433 YAASRDDQQDYERELRAQARE-----ERHRYREEMEKIRLVEEETEKK 475


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +2

Query: 209 KTILKAMHHAGKEPFPTIYV-DSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEE 385
           K +  A++       P I+  D +   +D ++  K+  KKI++   R      ++ ++EE
Sbjct: 592 KPLKAALNPLDMSRLPKIHPPDDEQVDEDNNIKNKTTAKKIEEPLPRTKKPEKEEEESEE 651

Query: 386 ENTEKRSQNLDEAKKILLQEDPSLPKAT 469
           E +E+ S+  +E +K+   +D    KAT
Sbjct: 652 E-SEEESEEEEETEKV--NKDALKAKAT 676


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 520  QRMGTSSPAPR*ISGIPDPA*WHWVPTVRSTWFTMSDLQCSSP 648
            +R G + P P  + GI       W  +V +T  +  D  CSSP
Sbjct: 1863 KRPGKAKPVPIDLEGITSDIIMQWAESVTNTSGSDEDSPCSSP 1905


>SB_43914| Best HMM Match : IRK (HMM E-Value=5.3)
          Length = 141

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 253 KWLFASMMHCFQYCLEWFFFRTITCIVI 170
           KW +  ++ C  Y L W  F TI  +++
Sbjct: 103 KWHWVILLFCVSYILSWVLFGTIWWLIV 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,849,809
Number of Sequences: 59808
Number of extensions: 470049
Number of successful extensions: 1251
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)