Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    26   8.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   8.3  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   8.3  

>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 323 LGVCQHGRGCEIHFRSVERSQAGKTKGRWHSI 418
           LG C      ++  R V+R   GK K +W+S+
Sbjct: 32  LGTCDQDSVHDLWRRFVKRWNDGKMKSKWYSL 63


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 458  YNGESXTAARQELIMSVTGRRQXRDKTTITD 550
            Y G+   AAR+  I+S  G  Q  D   + D
Sbjct: 931  YGGQKNQAARRSTILSALGNMQVEDLQILVD 961


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 654 GDPGXGGXFXQNPRPXXSRLSXXSXGPSAAPRG 556
           GDP       QNP      L+  + G SA P G
Sbjct: 280 GDPALAQAITQNPEAFLQLLAEGAEGESALPSG 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,404
Number of Sequences: 5004
Number of extensions: 25143
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)