Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L17
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    30   2.2  
05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507     30   2.9  
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760     28   8.7  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -2

Query: 504  DIMSSWRAAVXDSPLYSTRDPARKQPQAGMECQRPFVLPACERSTERKWISQPRPC 337
            D M+S++ +V      ST++  R    +G    +P + PA + S+E+K   QP PC
Sbjct: 1413 DQMNSYKGSVCGP---STKEQKRA---SGELANKPLLTPAVDHSSEQKHDGQPTPC 1462


>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
          Length = 353

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
 Frame = +2

Query: 470 SXTAARQELIMSVTGRRQXRDKTTITDRQP-----RGAALGPXDXWESRLXXGRG--FCX 628
           S  AA  EL++ V      R       R P     RG A  P    +  +   R      
Sbjct: 72  SPDAAASELLLPVASSPSPRSAAAAASRSPSWDRSRGRASAPGSPMDGVVEPPRKEVLAL 131

Query: 629 KXPPXPGSPSXXPAGXEV-PXVT*SPXTQG 715
             PP PG+P+  P   E    VT +P + G
Sbjct: 132 PPPPSPGTPAPPPPAAEAQSPVTPAPVSTG 161


>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
          Length = 289

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 393 RRKAVGIPSPPVAASAPDLLSSIMESQXLLXAKNS*CXSPGD 518
           ++KA+G   P  AASAP   +S   +  L  A +S   S GD
Sbjct: 114 KKKAMGAVQPRAAASAPSQCTSSAMAPALSPASSSVTSSSGD 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,112
Number of Sequences: 37544
Number of extensions: 244086
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)