Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L17
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14)                   31   0.95 
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)                   31   0.95 
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)                      30   2.2  
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                30   2.2  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              30   2.9  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   3.8  
SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)              29   5.1  
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)                   28   8.9  
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)                    28   8.9  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    28   8.9  

>SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14)
          Length = 661

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 459 YSTRDPARKQPQAGMECQRPFVLPACERSTERKWISQP-RPCWQTPSRQAPRPKSSL 292
           Y+   P   Q  +G   + PFV PA    + R     P RP W T  R APR + +L
Sbjct: 603 YTPALPTIPQAPSGAPAKTPFVAPAAP--SPRPLTGLPGRPSWNTVIRYAPRYRDTL 657


>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
          Length = 1447

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 459  YSTRDPARKQPQAGMECQRPFVLPACERSTERKWISQP-RPCWQTPSRQAPRPKSSL 292
            Y+   P   Q  +G   + PFV PA    + R     P RP W T  R APR + +L
Sbjct: 1389 YTPALPTIPQAPSGAPAKTPFVAPAAP--SPRPLTGLPGRPSWNTVIRYAPRYRDTL 1443


>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 521

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 390 PACERSTERKWISQPRPCWQTPSRQAPRPKS 298
           PA ER   R    +PRP  Q P+ Q PRPK+
Sbjct: 259 PATERPKPRT--EKPRPITQPPTTQRPRPKT 287


>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +2

Query: 455 EYNGESXTAARQELIMSVTGRRQXRDKTTITDRQPRGAALGPXDXWESRLXXGRGFCXKX 634
           E NGE+  +A++E   +    ++ + KTT+T R+    ALGP     SR   G+      
Sbjct: 31  EQNGENNDSAKEESKKNKKEAKEAKSKTTLT-RKNISNALGPPPDPPSRPGGGKEEEPTS 89

Query: 635 PP 640
           PP
Sbjct: 90  PP 91


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 644  PGSPSXXPAGXEVPXVT*SPXTQGPXGXRAVPXPGXXGXXR 766
            PG+P+  P    +P        +GP G   +P PG  G  R
Sbjct: 1858 PGNPAGPPGRDGIPGPPGRQGGKGPAGIPGIPGPGGVGKRR 1898


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
 Frame = +2

Query: 635 PPXPGSPSXXPAGXEVPXVT*SPXTQGPXGXRA-VPXPGXXGXXRXXGXXGXXXXXSXCF 811
           PP P  P   P     P     P T GP G    V  PG  G     G  G         
Sbjct: 287 PPGPQMPPGPPGLPGAPGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPN 346

Query: 812 GRPXXXXXXYPP 847
           G+P       PP
Sbjct: 347 GQPGPPGINGPP 358



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
 Frame = +2

Query: 635 PPXPGSPSXXPAGXEVPXVT*SPXTQGPXGXRA-VPXPGXXGXXRXXGXXGXXXXXSXCF 811
           PP P  P   P     P     P T GP G    V  PG  G     G  G         
Sbjct: 372 PPGPQMPPGPPGLPGAPGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPN 431

Query: 812 GRPXXXXXXYPP 847
           G+P       PP
Sbjct: 432 GQPGPPGINGPP 443


>SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 483 AAVXDSPLYSTRDPARKQPQAGMECQRPFV 394
           AAV D P+ S++ P  K+PQ   + + PF+
Sbjct: 184 AAVADEPVASSKKPRLKEPQEPPQMKLPFI 213


>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 440

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 614 RGFCXKXPPXPGSPSXXPAGXEVPXVT*SPXTQGPXGXRAVPXP 745
           +G     PP PG+P   P G  VP +   P +Q P      P P
Sbjct: 377 QGVPYSMPPRPGAPGTMPTG-PVPLLGNPPSSQAPPARGPRPMP 419


>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 346

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 459 YSTRDPARKQPQAGMECQRPFVLPACERSTERKWISQP-RPCWQTPSRQAPRPKSSL 292
           Y+   P   Q  +G   + P V PA    + R     P RP W T  R APR + +L
Sbjct: 285 YTPALPTIPQAPSGAPAKTPSVAPAAP--SPRPLTGLPGRPSWNTVIRYAPRYRDTL 339


>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
          Length = 347

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 459 YSTRDPARKQPQAGMECQRPFVLPACERSTERKWISQP-RPCWQTPSRQAPRPKSSL 292
           Y+   P   Q  +G   + P V PA    + R     P RP W T  R APR + +L
Sbjct: 289 YTPALPTIPQAPSGAPAKTPSVAPAAP--SPRPLTGLPGRPSWNTVIRYAPRYRDTL 343


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 459  YSTRDPARKQPQAGMECQRPFVLPACERSTERKWISQP-RPCWQTPSRQAPRPKSSL 292
            Y+   P   Q  +G   + P V PA    + R     P RP W T  R APR + +L
Sbjct: 965  YTPALPTIPQAPSGAPAKTPSVAPAAP--SPRPLTGLPGRPSWNTVIRYAPRYRDTL 1019


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,790,983
Number of Sequences: 59808
Number of extensions: 243771
Number of successful extensions: 721
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)