Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_L17
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 33 0.28
U67949-2|AAB07560.2| 368|Caenorhabditis elegans Hypothetical pr... 31 1.1
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 1.9
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 5.9
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 5.9
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 5.9
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 7.8
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 28 7.8
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 620 FCXKXPPXPGSPSXXPAGXEVPXVT*SPXTQGPXGXRAVP-XPGXXGXXRXXGXXG 784
FC + PP P + P P +P QGP G P PG G G G
Sbjct: 137 FCFECPPGPAGNAGNPGPKGPPGQPGAPGEQGPNGRPGAPGAPGPQGPPGTAGNDG 192
>U67949-2|AAB07560.2| 368|Caenorhabditis elegans Hypothetical
protein F55A4.2 protein.
Length = 368
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 576 PSAAPRGWXXXXXXXXXXXXXXVTDIMSSWRAAVXDSPLYSTRDP--ARKQPQAGMECQR 403
P+AAPR TD + S+ A++ D ST +P K +
Sbjct: 29 PTAAPRPDTTEVFGRREANSSPNTDFIQSFCASIQDESCSSTDEPNFEFKNDITERLWLK 88
Query: 402 PF-VLPACERSTERKWISQPRPCW 334
PF ++P+ + ++ K S PR CW
Sbjct: 89 PFDIVPSPQILSDSKKTSSPRRCW 112
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = +2
Query: 623 CXKXPPXPGSPSXXPAGXEVPXVT*SPXTQGPXGXRAVP-XPGXXGXXRXXGXXG 784
C K PP P P+ P +P T G G +P PG G G G
Sbjct: 153 CQKCPPGPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGLPGPPGPSGPQGAPGVPG 207
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +2
Query: 638 PXPGSPSXXPAGXEVPXVT*SPXTQGPXGXRAVP-XPGXXGXXRXXGXXG 784
P P P P +P P QGP G A P PG G G G
Sbjct: 137 PCPQGPPGPPGQPGIPGDNGPPGEQGPKGPDAAPGEPGPKGPIGPPGPPG 186
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +2
Query: 620 FCXKXPPXPGSPSXXPAGXEVPXVT*SPXTQGPXGXRAVP-XPGXXGXXRXXGXXG 784
FC P P P G P + +P GP G P PG G G G
Sbjct: 252 FCVTCPAGPDGTPGQPGGTGKPGLGGAPGILGPMGKNGQPGAPGGYGSPGKQGSMG 307
>Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 444 PARKQPQAGMECQRPFVLPACERSTERKWISQPRPCWQTPSRQAPRPKSS 295
PA P +C +P P T + +SQ P TPS+ P S+
Sbjct: 69 PATSSPNVQTQCHQP---PVVRSQTHQASVSQTTPTQTTPSQYTPASVST 115
>Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 444 PARKQPQAGMECQRPFVLPACERSTERKWISQPRPCWQTPSRQAPRPKSS 295
PA P +C +P P T + +SQ P TPS+ P S+
Sbjct: 69 PATSSPNVQTQCHQP---PVVRSQTHQASVSQTTPTQTTPSQYTPASVST 115
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 495 SSWRAAVXDSPLYSTRDPARKQPQAGMECQRPFVLPACERSTE 367
S W V + D +++P+ G+EC++P+++ + S E
Sbjct: 185 SRWLLNVEKRRVSDILDRTKREPKMGIECRKPYIVSSEASSLE 227
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 495 SSWRAAVXDSPLYSTRDPARKQPQAGMECQRPFVLPACERSTE 367
S W V + D +++P+ G+EC++P+++ + S E
Sbjct: 185 SRWLLNVEKRRVSDILDRTKREPKMGIECRKPYIVSSEASSLE 227
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Frame = +2
Query: 620 FCXKXPPXPGSPS--XXPAGXEVP----XVT*SPXTQGPXGXRAVPXP-GXXGXXRXXGX 778
FC PP P P+ PAG P T S +GP G P P G G G
Sbjct: 171 FCFDCPPGPAGPAGGPGPAGPPGPAGADGNTPSGGGEGPAGPPGPPGPAGNPGTDGAPGN 230
Query: 779 XGXXXXXSXCFGRPXXXXXXYPP 847
G + G P PP
Sbjct: 231 PGAPGQVTETPGTPGPAGAAGPP 253
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +2
Query: 620 FCXKXPPXPGSPS------XXPAGXEVPXVT*SPXTQGPXGXRAVP-XPGXXGXXRXXGX 778
FC PP P P+ P G P T S GP G P PG G G
Sbjct: 165 FCFDCPPGPAGPAGNAGPPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGN 224
Query: 779 XG 784
G
Sbjct: 225 PG 226
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Frame = -2
Query: 783 PXXPXXRXXPXXPGX-GTARXPXGPWVXGD*VTXGTSXPAGXXDG--DPGXGGXFXQNPR 613
P P P G G P P V G G P G G PG G Q +
Sbjct: 157 PCPPGPAGEPGHDGAPGAPGKPGAPGVGGGSGAPGAPGPKGAPGGPGQPGRDGQPGQAGQ 216
Query: 612 PXXSRLSXXSXGPSAAP 562
P S GP+ P
Sbjct: 217 PGSSSSEPGQPGPNGQP 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,999
Number of Sequences: 27780
Number of extensions: 185705
Number of successful extensions: 483
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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